# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	1.56e-11	d.17.4.10	98525
1nwwA	149	4.02e-11	d.17.4.8	86306
1tuhA	156	9.53e-10	d.17.4.11	107345
2bngA	149	5.88e-09		
1buqA	125	1.39e-08	d.17.4.3	38111
1ohpA	125	1.54e-08	d.17.4.3	118702
1oh0A	131	1.84e-08	d.17.4.3	87004
1ocvA	125	2.67e-08	d.17.4.3	86810
1dmmA	131	3.75e-08	d.17.4.3	38114
1ea2A	131	2.65e-07	d.17.4.3	64860
1opy	131	1.33e-06		
1sjwA	144	6.97e-06	d.17.4.9	98899
2geyA	158	2.37e-05		
2a15A	139	0.000110	d.17.4.3	125973
2ux0A	143	0.000680		
2chcA	170	0.003625		
3cu3A	172	0.006543		
1m98A	317	0.01006	a.175.1.1,d.17.4.6	78866,78867
3bb9A	148	0.01834		
2rfrA	155	0.02615		
1hkxA	147	0.03249	d.17.4.7	83567
2f86B	143	0.04273		
2gxfA	142	0.06240		
2r4iA	123	0.1402		
2rgqA	144	0.4048		
2owpA	129	0.5173		
3blzA	128	1.361		
3cnxA	170	1.521		
1tp6A	128	3.229	d.17.4.12	107184
1uliB	187	5.861	d.17.4.4	107923
1jkgB	250	8.518	d.17.4.2	66796
3b7cA	122	9.201		
2db1A	118	9.493		
2b1xB	172	19.04	d.17.4.4	127677
1bco	327	26.25		
1bcoA	327	29.59	b.48.1.1,c.55.3.3	26431,33676
2iorA	235	44.89		
1ekqA	272	48.69	c.72.1.2	34941
1k8vA	40	50.46	j.6.1.1	72182
1ounA	127	59.45	d.17.4.2	38090
2gbwB	174	62.53		
2qyxA	238	64.72		
2hhiA	204	68.16		
2oemA	413	69.91		
1dkxA	219	74.65	a.8.4.1,b.130.1.1	90339,90340
1zo2A	129	76.91		
2ff4A	388	78.51	a.4.6.1,a.118.8.3,b.26.1.2	133367,133368,133369
2blfB	81	79.35		
1wfdA	93	79.42	a.7.14.1	114578
1gceA	364	80.06	e.3.1.1	42738
1l3kA	196	80.72	d.58.7.1,d.58.7.1	73539,73540
1dz4A	414	81.55	a.104.1.1	18903
2ckfB	174	83.85		
1wddA	477	85.03	c.1.14.1,d.58.9.1	114528,114529
2avkA	136	85.59		
2frvB	536	89.88	e.18.1.1	43291