# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	5.29e-11	d.17.4.10	98525
1nwwA	149	9.05e-11	d.17.4.8	86306
1tuhA	156	1.89e-09	d.17.4.11	107345
2bngA	149	4.83e-09		
1buqA	125	3.05e-08	d.17.4.3	38111
1oh0A	131	3.60e-08	d.17.4.3	87004
1ohpA	125	4.21e-08	d.17.4.3	118702
1ocvA	125	6.01e-08	d.17.4.3	86810
1dmmA	131	1.44e-07	d.17.4.3	38114
1ea2A	131	1.00e-06	d.17.4.3	64860
1opy	131	2.93e-06		
1sjwA	144	1.11e-05	d.17.4.9	98899
2geyA	158	3.52e-05		
2a15A	139	0.000201	d.17.4.3	125973
2ux0A	143	0.000916		
2chcA	170	0.006551		
3cu3A	172	0.007901		
1m98A	317	0.01282	a.175.1.1,d.17.4.6	78866,78867
2rfrA	155	0.03230		
3bb9A	148	0.03254		
1hkxA	147	0.04011	d.17.4.7	83567
2f86B	143	0.04861		
2gxfA	142	0.08946		
2r4iA	123	0.1685		
2rgqA	144	0.4870		
2owpA	129	0.5785		
3blzA	128	1.319		
3cnxA	170	1.374		
1tp6A	128	2.843	d.17.4.12	107184
2db1A	118	4.394		
1uliB	187	6.629	d.17.4.4	107923
3b7cA	122	7.612		
1jkgB	250	7.858	d.17.4.2	66796
2b1xB	172	19.46	d.17.4.4	127677
1bco	327	28.94		
1bcoA	327	30.90	b.48.1.1,c.55.3.3	26431,33676
1ounA	127	37.93	d.17.4.2	38090
2hglA	136	38.82		
1dkxA	219	42.05	a.8.4.1,b.130.1.1	90339,90340
2iorA	235	51.28		
2hhiA	204	51.77		
1gceA	364	58.66	e.3.1.1	42738
1oiaA	95	59.65	d.58.7.1	87051
1ayoA	130	63.84	b.2.4.1	22431
2achA	360	66.77	e.1.1.1	42626
1askA	127	67.89	d.17.4.2	38094
1vqqA	646	69.10	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
2cw9A	194	72.75	d.17.4.13	130920
2avkA	136	73.18		
2gbwB	174	74.66		
1jb2A	127	75.32	d.17.4.2	71624
1k8vA	40	75.86	j.6.1.1	72182
1u2fA	90	83.34	d.58.7.1	39168
1dz4A	414	87.96	a.104.1.1	18903
1l3kA	196	89.73	d.58.7.1,d.58.7.1	73539,73540