# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	1.03e-11	d.17.4.10	98525
1nwwA	149	2.27e-11	d.17.4.8	86306
1tuhA	156	7.96e-10	d.17.4.11	107345
1buqA	125	2.65e-09	d.17.4.3	38111
2bngA	149	2.84e-09		
1ohpA	125	5.73e-09	d.17.4.3	118702
1oh0A	131	7.66e-09	d.17.4.3	87004
1ocvA	125	1.26e-08	d.17.4.3	86810
1dmmA	131	2.24e-08	d.17.4.3	38114
1ea2A	131	9.18e-08	d.17.4.3	64860
1opy	131	1.57e-06		
1sjwA	144	6.88e-06	d.17.4.9	98899
2a15A	139	1.38e-05	d.17.4.3	125973
2geyA	158	6.42e-05		
2ux0A	143	0.000808		
1m98A	317	0.000951	a.175.1.1,d.17.4.6	78866,78867
2chcA	170	0.008447		
1hkxA	147	0.01100	d.17.4.7	83567
2f86B	143	0.01595		
3cu3A	172	0.02117		
2gxfA	142	0.02239		
3bb9A	148	0.02318		
2rfrA	155	0.03084		
2r4iA	123	0.1293		
2rgqA	144	0.4208		
2owpA	129	0.5604		
3cnxA	170	0.6434		
3b7cA	122	1.149		
2db1A	118	1.866		
1jkgB	250	2.129	d.17.4.2	66796
3blzA	128	2.440		
1tp6A	128	4.289	d.17.4.12	107184
2qyxA	238	4.841		
1uliB	187	6.504	d.17.4.4	107923
2b1xB	172	7.006	d.17.4.4	127677
2hhiA	204	14.00		
1pbyB	337	14.41	b.69.2.2	94422
1wfdA	93	22.87	a.7.14.1	114578
2frvB	536	28.70	e.18.1.1	43291
2hglA	136	31.55		
2gbwB	174	32.56		
1c25	161	35.39		
1bco	327	36.89		
2avkA	136	37.34		
1bcoA	327	39.26	b.48.1.1,c.55.3.3	26431,33676
2cw9A	194	41.26	d.17.4.13	130920
1af0A	471	42.17	b.80.7.1,d.92.1.6	28017,40301
1jfbA	404	43.53	a.104.1.1	66624
1ounA	127	43.88	d.17.4.2	38090
1oiaA	95	51.07	d.58.7.1	87051
1f24A	402	51.54	a.104.1.1	18953
2ckfB	174	52.37		
1nu4A	97	57.75	d.58.7.1	80731
1satA	471	60.44	b.80.7.1,d.92.1.6	28014,40300
1dkxA	219	62.54	a.8.4.1,b.130.1.1	90339,90340
1askA	127	63.81	d.17.4.2	38094
1m3sA	186	69.35	c.80.1.3	78573
1qo3C	137	69.57	d.169.1.1	42350
1odoA	408	70.24	a.104.1.1	92783
1htrB	329	74.55		
1mwmA	320	77.06	c.55.1.1,c.55.1.1	79580,79581
2ywkA	95	78.96		
1jb2A	127	80.15	d.17.4.2	71624
1dv8A	128	89.40	d.169.1.1	42352
1vlsA	146	89.47	a.24.2.1	16532