# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	1.05e-05	d.17.4.10	98525
1tuhA	156	3.17e-05	d.17.4.11	107345
1oh0A	131	0.000371	d.17.4.3	87004
1nwwA	149	0.000388	d.17.4.8	86306
1ea2A	131	0.000456	d.17.4.3	64860
1buqA	125	0.000498	d.17.4.3	38111
1dmmA	131	0.000540	d.17.4.3	38114
1ohpA	125	0.001410	d.17.4.3	118702
1ocvA	125	0.001485	d.17.4.3	86810
1opy	131	0.001539		
2bngA	149	0.001706		
2geyA	158	0.01602		
3cu3A	172	0.02030		
2a15A	139	0.02481	d.17.4.3	125973
1sjwA	144	0.1012	d.17.4.9	98899
1m98A	317	0.1749	a.175.1.1,d.17.4.6	78866,78867
2ux0A	143	0.1923		
1uliB	187	0.2245	d.17.4.4	107923
2chcA	170	0.2694		
2rgqA	144	0.4358		
1hkxA	147	1.079	d.17.4.7	83567
2b1xB	172	1.165	d.17.4.4	127677
3bb9A	148	1.268		
1tp6A	128	1.429	d.17.4.12	107184
2owpA	129	1.726		
2ckfB	174	1.758		
3cnxA	170	1.939		
2gxfA	142	2.665		
1o7nB	194	2.984	d.17.4.4	81164
2gbwB	174	4.833		
2rfrA	155	6.006		
1ndoB	194	7.213	d.17.4.4	38121
1zx2A	147	8.050		
2imjA	166	8.409		
2qiyA	154	8.718		
3blzA	128	8.840		
2bmoB	194	10.43	d.17.4.4	128806
1eg9B	194	11.14	d.17.4.4	38120
3b7cA	122	13.77		
1zo2A	129	13.97		
2r4iA	123	16.38		
1ar0A	127	18.18	d.17.4.2	38092
2f86B	143	19.20		
1wuiL	534	26.94	e.18.1.1	121289
1gy6A	127	27.70	d.17.4.2	70736
2fhpA	187	28.02	c.66.1.46	133495
1askA	127	30.74	d.17.4.2	38094
1jb2A	127	30.74	d.17.4.2	71624
1jkgB	250	31.19	d.17.4.2	66796
1gybA	125	33.73	d.17.4.2	70744
1h2aL	567	36.37	e.18.1.1	43299
1tigA	94	36.61	d.68.1.1	39566
2cvhA	220	37.30		
1h2rL	534	38.34	e.18.1.1	43298
2cw9A	194	43.32	d.17.4.13	130920
1ounA	127	44.13	d.17.4.2	38090
2esrA	177	50.94	c.66.1.46	132344
2b02A	119	52.65		
1tig	94	57.00		
1ubkL	534	63.59	e.18.1.1	88422
1p97A	114	69.26	d.110.3.7	94382
2hbtA	247	69.60		
1vqqA	646	72.44	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
1jkgA	140	72.47	d.17.4.2	66795
2a84A	300	75.08	c.26.1.4	126389
1bpyA	335	75.93	a.60.6.1,a.60.12.1,d.218.1.2	17980,75819,75820
1trb	320	76.40		
1of5B	184	77.69	d.17.4.2	86934
1pbuA	162	77.78	d.58.46.1	88030
2db1A	118	78.15		
2pil	159	80.05		
2i62A	265	80.52		
2q22A	139	83.18		
1div	149	85.59		
1b79A	119	86.15	a.81.1.1	18451
1oqvA	192	86.42	d.24.1.2	87320