# List of top-scoring protein chains for T0451.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	1.48e-11	d.17.4.10	98525
1z1sA	163	8.78e-09		
1nu3A	149	1.97e-08	d.17.4.8	86170
1nwwA	149	1.97e-08	d.17.4.8	86306
1tuhA	156	2.24e-08	d.17.4.11	107345
2bngA	149	2.99e-08		
1dmnA	131	1.04e-07	d.17.4.3	38115
1e97A	131	1.08e-07	d.17.4.3	64803
1ohsA	125	1.35e-07	d.17.4.3	118706
1iskA	125	1.40e-07	d.17.4.3	38109
1dmmA	131	1.40e-07	d.17.4.3	38114
1ohpA	125	1.44e-07	d.17.4.3	118702
1ocvA	125	1.49e-07	d.17.4.3	86810
1gs3A	131	1.59e-07	d.17.4.3	76327
1buqA	125	1.61e-07	d.17.4.3	38111
1dmqA	131	1.70e-07	d.17.4.3	38116
1w6yA	131	1.71e-07	d.17.4.3	120678
8choA	125	1.88e-07	d.17.4.3	38108
1ohoA	131	2.08e-07	d.17.4.3	118701
2pzvA	131	2.10e-07		
1oh0A	131	2.29e-07	d.17.4.3	87004
1ea2A	131	2.33e-07	d.17.4.3	64860
1w01A	131	2.74e-07	d.17.4.3	108979
1k41A	131	2.78e-07	d.17.4.3	77252
1cqsA	131	2.94e-07	d.17.4.3	83165
1vzzA	131	3.55e-07	d.17.4.3	108977
1ogzA	125	4.14e-07	d.17.4.3	92976
2a15A	139	4.19e-07	d.17.4.3	125973
1w02A	131	4.78e-07	d.17.4.3	108981
1w00A	131	4.81e-07	d.17.4.3	120554
1c7hA	131	5.78e-07	d.17.4.3	38117
2gexA	152	3.99e-05		
2geyA	158	0.000181		
1sjwA	144	0.000406	d.17.4.9	98899
1m98A	317	0.01069	a.175.1.1,d.17.4.6	78866,78867
2f99A	153	0.01543		
3b8lA	163	0.03051		
2gxfA	142	0.08655		
1hkxA	147	0.1372	d.17.4.7	83567
3cu3A	172	0.1474		
2chcA	170	0.1809		
3cnxA	170	0.2341		
2ux0A	143	0.2908		
2rfrA	155	0.4799		
2owpA	129	1.148		
2r4iA	123	4.546		
1tp6A	128	5.153	d.17.4.12	107184
2imjA	166	5.620		
2gljA	461	5.987		
2f86B	143	11.53		
1wqlB	186	12.32	d.17.4.4	121172
1zo2A	129	12.73		
2b1xB	172	15.32	d.17.4.4	127677
2piiA	112	16.59	d.58.5.1	39071
3bb9A	148	22.67		
2rcdA	129	23.03		
1qysA	106	23.89	k.41.1.1	96603
3b7cA	122	26.84		
2odlA	373	27.39		
1jkgB	250	28.42	d.17.4.2	66796
2rgqA	144	33.49		
1uliB	187	35.56	d.17.4.4	107923
2gjhA	62	37.79		
1o1zA	234	45.16	c.1.18.3	86555
1xqbA	247	45.86	e.56.1.1	115839
1dvoA	152	51.64	a.136.1.1	19623
2gw8A	114	59.72		
2i4vA	99	70.14