# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	7.22e-14	d.17.4.10	98525
2a15A	139	1.01e-13	d.17.4.3	125973
2bngA	149	1.16e-13		
1tuhA	156	1.27e-13	d.17.4.11	107345
1nwwA	149	1.29e-13	d.17.4.8	86306
1oh0A	131	2.63e-13	d.17.4.3	87004
1ohpA	125	1.04e-12	d.17.4.3	118702
1dmmA	131	1.42e-12	d.17.4.3	38114
1sjwA	144	1.83e-12	d.17.4.9	98899
2geyA	158	4.61e-12		
2gxfA	142	9.88e-08		
3bb9A	148	1.33e-06		
2rfrA	155	2.91e-06		
3cnxA	170	3.58e-06		
2chcA	170	5.05e-06		
1hkxA	147	1.21e-05	d.17.4.7	83567
3cu3A	172	2.31e-05		
2r4iA	123	8.59e-05		
3b7cA	122	8.60e-05		
2ux0A	143	8.96e-05		
3blzA	128	0.000259		
2f86B	143	0.000527		
1m98A	317	0.002020	a.175.1.1,d.17.4.6	78866,78867
2owpA	129	0.01021		
2rgqA	144	0.01061		
1tp6A	128	0.01644	d.17.4.12	107184
2b1xB	172	0.06844	d.17.4.4	127677
2imjA	166	0.06890		
1uliB	187	0.6526	d.17.4.4	107923
1idpA	172	1.804	d.17.4.1	83685
2gbwB	174	3.172		
2qiyA	154	4.410		
1zo2A	129	4.982		
1gy7A	125	5.547	d.17.4.2	70738
2qguA	211	9.215		
2bmoB	194	9.420	d.17.4.4	128806
2qyxA	238	15.38		
2cw9A	194	15.79	d.17.4.13	130920
1jkgA	140	17.22	d.17.4.2	66795
1yreA	197	19.14	d.108.1.1	123919
1tuaA	191	22.67	d.51.1.1,d.51.1.1	107321,107322
2z10A	194	23.49		
1gy6A	127	24.11	d.17.4.2	70736
1zx2A	147	24.99		
1o7nB	194	27.35	d.17.4.4	81164
2b02A	119	27.88		
2qh5A	308	31.56		
1gybA	125	34.24	d.17.4.2	70744
2ia7A	134	41.54		
2d69A	430	44.94	c.1.14.1,d.58.9.1	131292,131293
1obrA	326	51.39	c.56.5.2	33828
2vi7A	177	52.87		
1wv9A	94	52.92		
2fxtA	192	53.04		
2pftA	571	53.33		
1qysA	106	53.63	k.41.1.1	96603
2ckfB	174	53.83		
2pd8A	149	54.95		
1q40B	219	57.73	d.17.4.2	95771
2fsrA	195	65.90	d.108.1.1	134036
2pdrA	149	66.29		
1ib8A	164	70.11	b.38.2.1,d.52.4.1	71168,71169
3beoA	375	71.18		
1fxkB	109	71.25	a.2.5.1	15704
1vhsA	175	74.68	d.108.1.1	100698
1ofdA	1520	76.16	b.80.4.1,c.1.4.1,d.153.1.1	86935,86936,86937
5rubA	490	78.25	c.1.14.1,d.58.9.1	29382,39288
2e57A	637	80.75		
1of5B	184	81.75	d.17.4.2	86934
2c1cA	312	84.40	c.56.5.1	129630
1yr0A	175	86.10	d.108.1.1	123905
3b33A	115	87.22		
1g1cA	99	87.88	b.1.1.4	65078