# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	2.78e-13	d.17.4.10	98525
1nwwA	149	4.23e-13	d.17.4.8	86306
2a15A	139	4.24e-13	d.17.4.3	125973
1tuhA	156	4.99e-13	d.17.4.11	107345
2bngA	149	7.04e-13		
1oh0A	131	7.86e-13	d.17.4.3	87004
1dmmA	131	2.47e-12	d.17.4.3	38114
1ohpA	125	2.69e-12	d.17.4.3	118702
1sjwA	144	1.18e-11	d.17.4.9	98899
2geyA	158	2.54e-11		
2gxfA	142	1.21e-07		
3bb9A	148	2.16e-06		
2rfrA	155	3.51e-06		
3cnxA	170	6.83e-06		
2chcA	170	8.11e-06		
1hkxA	147	1.06e-05	d.17.4.7	83567
3cu3A	172	2.93e-05		
2r4iA	123	0.000103		
3b7cA	122	0.000121		
2ux0A	143	0.000137		
3blzA	128	0.000341		
2f86B	143	0.000974		
1m98A	317	0.001694	a.175.1.1,d.17.4.6	78866,78867
2rgqA	144	0.01919		
2owpA	129	0.03424		
1tp6A	128	0.03624	d.17.4.12	107184
2imjA	166	0.07929		
2b1xB	172	0.1182	d.17.4.4	127677
1uliB	187	2.238	d.17.4.4	107923
2qiyA	154	3.577		
1idpA	172	4.991	d.17.4.1	83685
2gbwB	174	5.675		
1zo2A	129	6.263		
1gy7A	125	8.688	d.17.4.2	70738
2qyxA	238	9.544		
2qguA	211	10.80		
2bmoB	194	11.04	d.17.4.4	128806
2cw9A	194	11.20	d.17.4.13	130920
2fxtA	192	11.43		
1jkgA	140	18.56	d.17.4.2	66795
1zx2A	147	19.22		
1yreA	197	21.79	d.108.1.1	123919
1gy6A	127	29.01	d.17.4.2	70736
1wv9A	94	31.66		
2z10A	194	42.11		
2b02A	119	43.39		
1tuaA	191	45.04	d.51.1.1,d.51.1.1	107321,107322
2pd8A	149	46.95		
1peaA	385	47.77	c.93.1.1	35662
2qh5A	308	47.81		
1o7nB	194	48.20	d.17.4.4	81164
1q40B	219	50.63	d.17.4.2	95771
3beoA	375	53.42		
1gybA	125	58.45	d.17.4.2	70744
1obrA	326	59.82	c.56.5.2	33828
2ia7A	134	61.85		
2d69A	430	63.84	c.1.14.1,d.58.9.1	131292,131293
2pftA	571	65.58		
2elfA	370	67.17		
2vi7A	177	72.31		
1qysA	106	74.17	k.41.1.1	96603
2pdrA	149	76.25		
1fxkB	109	77.38	a.2.5.1	15704
2c1cA	312	80.44	c.56.5.1	129630
3b33A	115	81.17		
1yr0A	175	82.14	d.108.1.1	123905
2qflA	267	83.37