# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	3.02e-14	d.17.4.10	98525
2bngA	149	4.30e-14		
1nwwA	149	4.66e-14	d.17.4.8	86306
2a15A	139	8.61e-14	d.17.4.3	125973
1tuhA	156	8.70e-14	d.17.4.11	107345
1sjwA	144	1.64e-13	d.17.4.9	98899
1oh0A	131	3.40e-13	d.17.4.3	87004
1ohpA	125	4.67e-13	d.17.4.3	118702
1dmmA	131	6.67e-13	d.17.4.3	38114
2geyA	158	7.28e-13		
2gxfA	142	9.24e-08		
2rfrA	155	5.86e-07		
2chcA	170	1.16e-06		
1hkxA	147	1.36e-06	d.17.4.7	83567
3bb9A	148	1.93e-06		
3cu3A	172	2.79e-06		
3cnxA	170	6.92e-06		
2ux0A	143	1.27e-05		
2r4iA	123	1.62e-05		
2f86B	143	2.25e-05		
3b7cA	122	3.33e-05		
3blzA	128	5.39e-05		
2rgqA	144	0.000957		
1m98A	317	0.001798	a.175.1.1,d.17.4.6	78866,78867
2owpA	129	0.003916		
2imjA	166	0.01311		
1tp6A	128	0.04168	d.17.4.12	107184
2b1xB	172	0.1604	d.17.4.4	127677
1idpA	172	0.5244	d.17.4.1	83685
2qyxA	238	1.168		
1zo2A	129	1.362		
1uliB	187	1.537	d.17.4.4	107923
2gbwB	174	1.553		
1gy7A	125	3.615	d.17.4.2	70738
1gy6A	127	4.405	d.17.4.2	70736
2qiyA	154	6.096		
2bmoB	194	7.998	d.17.4.4	128806
1zx2A	147	8.054		
1jkgA	140	8.282	d.17.4.2	66795
2qguA	211	13.09		
1tuaA	191	14.62	d.51.1.1,d.51.1.1	107321,107322
1gybA	125	16.03	d.17.4.2	70744
2z10A	194	18.07		
1qysA	106	18.88	k.41.1.1	96603
2cw9A	194	20.02	d.17.4.13	130920
1o7nB	194	21.48	d.17.4.4	81164
1tkeA	224	23.26	d.15.10.1,d.67.1.1	112470,112471
2qh5A	308	25.67		
1yreA	197	28.22	d.108.1.1	123919
1fxkB	109	32.56	a.2.5.1	15704
2fxtA	192	33.39		
1wv9A	94	38.65		
5rubA	490	38.78	c.1.14.1,d.58.9.1	29382,39288
3b33A	115	39.02		
2ckfB	174	45.96		
2d69A	430	49.72	c.1.14.1,d.58.9.1	131292,131293
2b7nA	273	69.24		
1xcbA	211	70.71	a.4.5.38,c.2.1.12	109552,109553
1faaA	124	71.04	c.47.1.1	32738
1g1cA	99	72.04	b.1.1.4	65078
2a22A	215	72.15	d.159.1.7	126025
1yr0A	175	79.07	d.108.1.1	123905
1vhsA	175	79.83	d.108.1.1	100698
2b02A	119	82.28		
1vdwA	254	83.00	e.7.1.1	100569