# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	2.90e-14	d.17.4.10	98525
2bngA	149	3.78e-14		
1nwwA	149	3.99e-14	d.17.4.8	86306
2a15A	139	4.97e-14	d.17.4.3	125973
1tuhA	156	8.87e-14	d.17.4.11	107345
1oh0A	131	1.93e-13	d.17.4.3	87004
1sjwA	144	2.49e-13	d.17.4.9	98899
1ohpA	125	3.88e-13	d.17.4.3	118702
1dmmA	131	4.67e-13	d.17.4.3	38114
2geyA	158	1.73e-12		
2gxfA	142	1.64e-07		
2rfrA	155	9.36e-07		
2chcA	170	1.69e-06		
3bb9A	148	2.88e-06		
3cnxA	170	3.60e-06		
1hkxA	147	1.03e-05	d.17.4.7	83567
3cu3A	172	1.44e-05		
2r4iA	123	3.49e-05		
2ux0A	143	4.01e-05		
3b7cA	122	6.53e-05		
2f86B	143	0.000281		
3blzA	128	0.000477		
1m98A	317	0.000789	a.175.1.1,d.17.4.6	78866,78867
2owpA	129	0.005651		
2rgqA	144	0.005870		
1tp6A	128	0.03598	d.17.4.12	107184
2imjA	166	0.05439		
2b1xB	172	0.3578	d.17.4.4	127677
1idpA	172	1.260	d.17.4.1	83685
1uliB	187	4.158	d.17.4.4	107923
2gbwB	174	5.385		
1gy7A	125	6.572	d.17.4.2	70738
1zo2A	129	7.061		
2qiyA	154	8.242		
1qysA	106	12.82	k.41.1.1	96603
2qguA	211	13.37		
1jkgA	140	15.00	d.17.4.2	66795
1yreA	197	16.91	d.108.1.1	123919
2bmoB	194	17.86	d.17.4.4	128806
2qyxA	238	18.35		
1gy6A	127	22.06	d.17.4.2	70736
1zx2A	147	24.19		
3b33A	115	28.38		
2fsrA	195	29.90	d.108.1.1	134036
2fxtA	192	31.24		
2z10A	194	33.24		
2ft0A	235	39.40		
1wv9A	94	40.54		
2cw9A	194	40.68	d.17.4.13	130920
1vhsA	175	41.91	d.108.1.1	100698
2fckA	181	42.73	d.108.1.1	133272
1tkeA	224	45.95	d.15.10.1,d.67.1.1	112470,112471
2a22A	215	47.13	d.159.1.7	126025
2djkA	133	48.13	c.47.1.2	131548
1qstA	160	49.76	d.108.1.1	40804
1yr0A	175	51.02	d.108.1.1	123905
1w24A	182	52.33	d.159.1.7	120579
2qh5A	308	57.79		
2e3zA	465	57.81		
1o7nB	194	58.60	d.17.4.4	81164
1tuaA	191	59.92	d.51.1.1,d.51.1.1	107321,107322
1a5zA	319	62.03	c.2.1.5,d.162.1.1	30181,42148
1gybA	125	62.24	d.17.4.2	70744
3bczA	293	67.75		
2d69A	430	72.54	c.1.14.1,d.58.9.1	131292,131293
1q40B	219	73.86	d.17.4.2	95771
1hk8A	605	74.63	c.7.1.3	83540
1fxkB	109	75.71	a.2.5.1	15704
2obiA	183	76.45		
1yvoA	172	76.52	d.108.1.1	124106
2r2iA	198	82.77		
2ia7A	134	83.36		
2pd8A	149	84.35		
1omrA	201	84.96	a.39.1.5	93349
2ge3A	170	85.58	d.108.1.1	135044
3beoA	375	85.61		
1p0hA	318	87.70	d.108.1.1	93866