# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	5.11e-15	d.17.4.10	98525
2bngA	149	5.38e-15		
1nwwA	149	9.79e-15	d.17.4.8	86306
2a15A	139	1.37e-14	d.17.4.3	125973
1tuhA	156	1.66e-14	d.17.4.11	107345
1oh0A	131	3.42e-14	d.17.4.3	87004
1sjwA	144	6.36e-14	d.17.4.9	98899
1ohpA	125	9.25e-14	d.17.4.3	118702
1dmmA	131	1.06e-13	d.17.4.3	38114
2geyA	158	4.27e-13		
2gxfA	142	7.64e-08		
2rfrA	155	4.79e-07		
2chcA	170	1.00e-06		
3bb9A	148	1.48e-06		
3cnxA	170	1.73e-06		
1hkxA	147	6.46e-06	d.17.4.7	83567
3cu3A	172	7.11e-06		
2r4iA	123	2.12e-05		
2ux0A	143	2.89e-05		
3b7cA	122	3.50e-05		
2f86B	143	0.000141		
3blzA	128	0.000307		
1m98A	317	0.000414	a.175.1.1,d.17.4.6	78866,78867
2rgqA	144	0.004148		
2owpA	129	0.004984		
1tp6A	128	0.02293	d.17.4.12	107184
2imjA	166	0.03960		
2b1xB	172	0.1972	d.17.4.4	127677
1idpA	172	1.297	d.17.4.1	83685
1uliB	187	3.216	d.17.4.4	107923
2gbwB	174	5.253		
2qiyA	154	5.978		
1gy7A	125	6.714	d.17.4.2	70738
1zo2A	129	7.207		
2qyxA	238	10.15		
1qysA	106	11.43	k.41.1.1	96603
2qguA	211	13.03		
1jkgA	140	15.95	d.17.4.2	66795
1yreA	197	16.40	d.108.1.1	123919
1gy6A	127	17.29	d.17.4.2	70736
2bmoB	194	18.11	d.17.4.4	128806
1zx2A	147	24.58		
2fsrA	195	26.30	d.108.1.1	134036
2ft0A	235	26.59		
2a22A	215	27.99	d.159.1.7	126025
2fxtA	192	33.03		
2fckA	181	39.25	d.108.1.1	133272
2z10A	194	40.33		
1vhsA	175	41.24	d.108.1.1	100698
2e3zA	465	41.73		
3b33A	115	43.16		
1qstA	160	43.82	d.108.1.1	40804
2cw9A	194	44.25	d.17.4.13	130920
1wv9A	94	50.81		
1yr0A	175	54.32	d.108.1.1	123905
1a5zA	319	55.87	c.2.1.5,d.162.1.1	30181,42148
2obiA	183	56.47		
1tuaA	191	57.00	d.51.1.1,d.51.1.1	107321,107322
1omrA	201	57.20	a.39.1.5	93349
1tkeA	224	57.65	d.15.10.1,d.67.1.1	112470,112471
2d69A	430	59.22	c.1.14.1,d.58.9.1	131292,131293
2djkA	133	62.45	c.47.1.2	131548
2r2iA	198	62.94		
3bczA	293	64.19		
1o7nB	194	64.58	d.17.4.4	81164
1w24A	182	64.84	d.159.1.7	120579
2qh5A	308	65.74		
1yvoA	172	72.28	d.108.1.1	124106
1q40B	219	72.49	d.17.4.2	95771
1e4mM	501	72.79	c.1.8.4	59226
2ia7A	134	74.44		
1gybA	125	75.01	d.17.4.2	70744
1p0hA	318	80.04	d.108.1.1	93866
1hk8A	605	82.24	c.7.1.3	83540
3beoA	375	84.41		
1y0bA	197	85.12	c.61.1.1	122476
2ge3A	170	85.16	d.108.1.1	135044
1ofdA	1520	88.97	b.80.4.1,c.1.4.1,d.153.1.1	86935,86936,86937