# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	2.92e-14	d.17.4.10	98525
1nwwA	149	4.62e-14	d.17.4.8	86306
2bngA	149	1.50e-13		
2a15A	139	1.60e-13	d.17.4.3	125973
1tuhA	156	1.75e-13	d.17.4.11	107345
1sjwA	144	1.85e-13	d.17.4.9	98899
1oh0A	131	4.39e-13	d.17.4.3	87004
1dmmA	131	1.03e-12	d.17.4.3	38114
2geyA	158	1.22e-12		
1ohpA	125	1.36e-12	d.17.4.3	118702
2gxfA	142	4.94e-07		
2chcA	170	7.20e-07		
2rfrA	155	8.66e-07		
3cu3A	172	1.92e-06		
3bb9A	148	2.39e-06		
3cnxA	170	2.80e-06		
1hkxA	147	6.22e-06	d.17.4.7	83567
2ux0A	143	3.64e-05		
2f86B	143	0.000112		
3b7cA	122	0.000116		
2r4iA	123	0.000198		
1m98A	317	0.000393	a.175.1.1,d.17.4.6	78866,78867
3blzA	128	0.000450		
2rgqA	144	0.002818		
2owpA	129	0.004183		
2imjA	166	0.03456		
2b1xB	172	0.03905	d.17.4.4	127677
1tp6A	128	0.1803	d.17.4.12	107184
1uliB	187	0.4294	d.17.4.4	107923
1idpA	172	0.4711	d.17.4.1	83685
1zo2A	129	1.207		
2qiyA	154	2.115		
2gbwB	174	4.829		
1gy7A	125	5.075	d.17.4.2	70738
1gy6A	127	5.168	d.17.4.2	70736
1jkgA	140	6.343	d.17.4.2	66795
2fxtA	192	6.557		
1tkeA	224	7.720	d.15.10.1,d.67.1.1	112470,112471
2qyxA	238	7.808		
1zx2A	147	9.236		
1o7nB	194	11.01	d.17.4.4	81164
2nogA	173	11.21		
1gybA	125	13.40	d.17.4.2	70744
2bmoB	194	13.68	d.17.4.4	128806
2qguA	211	14.69		
2cmgA	262	15.28		
2ia7A	134	17.68		
2z10A	194	21.08		
1wlyA	333	21.80		
2a22A	215	22.50	d.159.1.7	126025
2ckfB	174	26.41		
2cw9A	194	30.51	d.17.4.13	130920
1qysA	106	31.19	k.41.1.1	96603
1yreA	197	32.00	d.108.1.1	123919
1qhfA	240	33.18	c.60.1.1	33960
2gs8A	317	41.34		
1yr0A	175	41.71	d.108.1.1	123905
2ft0A	235	46.66		
3cx5B	352	47.17		
2b02A	119	47.70		
1ex2A	189	49.51	c.51.4.2	33225
2cfuA	658	50.11		
2bl0B	145	51.37		
2v6xA	85	58.73		
3ck2A	176	63.60		
1h2eA	207	63.64	c.60.1.1	70857
1r2zA	274	70.42	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1nsjA	205	71.32	c.1.2.4	28560
1m3sA	186	74.33	c.80.1.3	78573
2qsjA	154	74.43		
2fsrA	195	75.65	d.108.1.1	134036
1wv9A	94	75.65		
2fe7A	166	75.78	d.108.1.1	133325
1tt7A	330	77.01	b.35.1.2,c.2.1.1	112623,112624
1uhkA	191	84.09	a.39.1.5	119681
1zsyA	357	84.74		
1qorA	327	86.87	b.35.1.2,c.2.1.1	24766,29782
2a4dA	160	89.49	d.20.1.1	126152