# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	3.96e-14	d.17.4.10	98525
1nwwA	149	7.88e-14	d.17.4.8	86306
2bngA	149	9.46e-14		
1tuhA	156	1.02e-13	d.17.4.11	107345
2a15A	139	1.33e-13	d.17.4.3	125973
1oh0A	131	2.19e-13	d.17.4.3	87004
1ohpA	125	6.06e-13	d.17.4.3	118702
1dmmA	131	6.28e-13	d.17.4.3	38114
1sjwA	144	6.90e-13	d.17.4.9	98899
2geyA	158	1.82e-12		
2gxfA	142	1.27e-07		
3bb9A	148	2.21e-06		
2rfrA	155	2.24e-06		
2chcA	170	2.58e-06		
3cnxA	170	2.77e-06		
1hkxA	147	4.91e-06	d.17.4.7	83567
3cu3A	172	1.63e-05		
2r4iA	123	3.20e-05		
2ux0A	143	4.52e-05		
3b7cA	122	5.09e-05		
2f86B	143	0.000156		
3blzA	128	0.000391		
1m98A	317	0.001381	a.175.1.1,d.17.4.6	78866,78867
2rgqA	144	0.005017		
2owpA	129	0.005508		
1tp6A	128	0.02348	d.17.4.12	107184
2imjA	166	0.04885		
2b1xB	172	0.08857	d.17.4.4	127677
1idpA	172	0.7317	d.17.4.1	83685
1uliB	187	1.495	d.17.4.4	107923
2gbwB	174	5.010		
1zo2A	129	5.070		
1gy7A	125	5.731	d.17.4.2	70738
2qiyA	154	6.043		
2qguA	211	10.24		
1jkgA	140	11.52	d.17.4.2	66795
1gy6A	127	12.72	d.17.4.2	70736
2fxtA	192	13.45		
1zx2A	147	14.55		
1yreA	197	16.85	d.108.1.1	123919
2cw9A	194	18.29	d.17.4.13	130920
2bmoB	194	18.59	d.17.4.4	128806
2qyxA	238	19.20		
3b33A	115	21.73		
2z10A	194	22.25		
2a22A	215	27.64	d.159.1.7	126025
1tuaA	191	30.17	d.51.1.1,d.51.1.1	107321,107322
1wv9A	94	32.20		
1gybA	125	33.64	d.17.4.2	70744
1o7nB	194	35.21	d.17.4.4	81164
1qysA	106	36.08	k.41.1.1	96603
5rubA	490	38.07	c.1.14.1,d.58.9.1	29382,39288
1fxkB	109	39.68	a.2.5.1	15704
1vhsA	175	47.94	d.108.1.1	100698
2ckfB	174	49.67		
2pftA	571	50.67		
1a5zA	319	51.22	c.2.1.5,d.162.1.1	30181,42148
1tkeA	224	53.65	d.15.10.1,d.67.1.1	112470,112471
2qh5A	308	60.68		
1yr0A	175	65.08	d.108.1.1	123905
2djkA	133	65.14	c.47.1.2	131548
2b02A	119	65.65		
2pdrA	149	65.81		
2ia7A	134	66.00		
1xewY	172	67.62		
1q40B	219	69.40	d.17.4.2	95771
3bzqA	114	72.20		
2d69A	430	73.03	c.1.14.1,d.58.9.1	131292,131293
1hk8A	605	75.71	c.7.1.3	83540
2vi7A	177	76.74		
1r2zA	274	78.60	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1mv8A	436	79.16	a.100.1.4,c.2.1.6,c.26.3.1	85128,85129,85130