# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	3.37e-14	d.17.4.8	86306
1s5aA	150	3.47e-14	d.17.4.10	98525
2a15A	139	4.94e-14	d.17.4.3	125973
2bngA	149	6.83e-14		
1tuhA	156	8.19e-14	d.17.4.11	107345
1oh0A	131	2.02e-13	d.17.4.3	87004
1dmmA	131	5.46e-13	d.17.4.3	38114
1ohpA	125	6.02e-13	d.17.4.3	118702
1sjwA	144	1.01e-12	d.17.4.9	98899
2geyA	158	2.89e-12		
2gxfA	142	1.62e-07		
2rfrA	155	1.08e-06		
3bb9A	148	2.31e-06		
3cnxA	170	3.71e-06		
1hkxA	147	5.17e-06	d.17.4.7	83567
2chcA	170	6.44e-06		
3cu3A	172	2.58e-05		
2r4iA	123	3.51e-05		
2ux0A	143	7.10e-05		
3b7cA	122	8.49e-05		
2f86B	143	0.000178		
3blzA	128	0.000301		
1m98A	317	0.003848	a.175.1.1,d.17.4.6	78866,78867
2owpA	129	0.006327		
2rgqA	144	0.008545		
1tp6A	128	0.07887	d.17.4.12	107184
2imjA	166	0.1214		
2b1xB	172	0.4590	d.17.4.4	127677
1idpA	172	2.149	d.17.4.1	83685
2fxtA	192	4.071		
2qiyA	154	7.119		
2gbwB	174	7.193		
1uliB	187	7.509	d.17.4.4	107923
1gy7A	125	7.965	d.17.4.2	70738
1zo2A	129	8.157		
1jkgA	140	14.07	d.17.4.2	66795
3b33A	115	15.96		
1yreA	197	16.02	d.108.1.1	123919
2qguA	211	16.65		
1zx2A	147	18.05		
2cw9A	194	21.46	d.17.4.13	130920
1tuaA	191	21.59	d.51.1.1,d.51.1.1	107321,107322
2bmoB	194	22.23	d.17.4.4	128806
1gy6A	127	23.14	d.17.4.2	70736
2z10A	194	24.96		
2qyxA	238	25.81		
1wv9A	94	26.92		
1peaA	385	32.76	c.93.1.1	35662
1qysA	106	38.15	k.41.1.1	96603
1gybA	125	41.41	d.17.4.2	70744
1q40B	219	42.30	d.17.4.2	95771
1tkeA	224	54.53	d.15.10.1,d.67.1.1	112470,112471
1vhsA	175	55.58	d.108.1.1	100698
2vi7A	177	56.43		
1fxkB	109	58.81	a.2.5.1	15704
2djkA	133	63.02	c.47.1.2	131548
2pd8A	149	70.86		
1o7nB	194	72.61	d.17.4.4	81164
2ia7A	134	77.28		
2prbA	196	79.14		
1hk8A	605	82.14	c.7.1.3	83540
1yr0A	175	82.60	d.108.1.1	123905
2pdrA	149	84.96		
2e57A	637	86.99