# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	4.51e-14	d.17.4.10	98525
2a15A	139	7.29e-14	d.17.4.3	125973
1nwwA	149	9.54e-14	d.17.4.8	86306
1tuhA	156	1.36e-13	d.17.4.11	107345
2bngA	149	1.44e-13		
1oh0A	131	2.79e-13	d.17.4.3	87004
1dmmA	131	6.00e-13	d.17.4.3	38114
1ohpA	125	6.49e-13	d.17.4.3	118702
1sjwA	144	6.69e-13	d.17.4.9	98899
2geyA	158	3.41e-12		
2gxfA	142	2.35e-07		
2rfrA	155	6.82e-07		
3bb9A	148	2.51e-06		
1hkxA	147	3.29e-06	d.17.4.7	83567
2chcA	170	4.08e-06		
3cnxA	170	4.47e-06		
3cu3A	172	8.71e-06		
2r4iA	123	3.12e-05		
2ux0A	143	4.62e-05		
3b7cA	122	6.77e-05		
2f86B	143	0.000127		
3blzA	128	0.000233		
1m98A	317	0.001922	a.175.1.1,d.17.4.6	78866,78867
2owpA	129	0.005261		
2rgqA	144	0.007394		
2imjA	166	0.04047		
1tp6A	128	0.08644	d.17.4.12	107184
2b1xB	172	0.2951	d.17.4.4	127677
1idpA	172	0.9527	d.17.4.1	83685
1uliB	187	1.892	d.17.4.4	107923
1zo2A	129	3.689		
2qiyA	154	5.428		
1gy7A	125	6.036	d.17.4.2	70738
2gbwB	174	6.623		
2qyxA	238	8.203		
1jkgA	140	10.61	d.17.4.2	66795
1zx2A	147	12.72		
2qguA	211	15.31		
1gy6A	127	16.28	d.17.4.2	70736
2fxtA	192	18.22		
1tuaA	191	25.10	d.51.1.1,d.51.1.1	107321,107322
1tkeA	224	25.75	d.15.10.1,d.67.1.1	112470,112471
1gybA	125	27.15	d.17.4.2	70744
3b33A	115	30.57		
2bmoB	194	31.06	d.17.4.4	128806
1fxkB	109	34.10	a.2.5.1	15704
2cw9A	194	35.29	d.17.4.13	130920
5rubA	490	36.34	c.1.14.1,d.58.9.1	29382,39288
1yreA	197	40.51	d.108.1.1	123919
1o7nB	194	41.06	d.17.4.4	81164
2z10A	194	42.63		
1q40B	219	48.61	d.17.4.2	95771
1qysA	106	51.07	k.41.1.1	96603
2d69A	430	51.58	c.1.14.1,d.58.9.1	131292,131293
1wv9A	94	56.94		
1peaA	385	57.99	c.93.1.1	35662
2pd8A	149	67.49		
2pftA	571	68.65		
1g1cA	99	74.65	b.1.1.4	65078
2ckfB	174	75.73		
1xewY	172	78.65		
1a5zA	319	79.95	c.2.1.5,d.162.1.1	30181,42148
2pdrA	149	80.14		
2b02A	119	81.56		
2vi7A	177	82.89		
2ia7A	134	82.90		
2cmgA	262	83.49		
2c1cA	312	85.06	c.56.5.1	129630