# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	1.31e-15	d.17.4.10	98525
1nwwA	149	1.46e-15	d.17.4.8	86306
2a15A	139	3.97e-15	d.17.4.3	125973
1sjwA	144	6.87e-15	d.17.4.9	98899
2bngA	149	8.42e-15		
1tuhA	156	1.85e-14	d.17.4.11	107345
1oh0A	131	2.99e-14	d.17.4.3	87004
1ohpA	125	5.24e-14	d.17.4.3	118702
1dmmA	131	7.14e-14	d.17.4.3	38114
2geyA	158	5.87e-13		
2rfrA	155	9.25e-08		
2chcA	170	1.43e-07		
2gxfA	142	2.07e-07		
3cu3A	172	3.78e-07		
3cnxA	170	9.97e-07		
1hkxA	147	2.66e-06	d.17.4.7	83567
3bb9A	148	3.74e-06		
2ux0A	143	1.43e-05		
2f86B	143	5.60e-05		
2r4iA	123	6.21e-05		
3blzA	128	6.83e-05		
3b7cA	122	0.000310		
1m98A	317	0.000982	a.175.1.1,d.17.4.6	78866,78867
2rgqA	144	0.002088		
2owpA	129	0.009101		
2b1xB	172	0.05427	d.17.4.4	127677
2imjA	166	0.06042		
1idpA	172	0.2454	d.17.4.1	83685
1tp6A	128	0.4141	d.17.4.12	107184
1uliB	187	0.4932	d.17.4.4	107923
2gbwB	174	1.369		
1zo2A	129	3.282		
2fxtA	192	5.519		
2bmoB	194	6.718	d.17.4.4	128806
1gy6A	127	9.072	d.17.4.2	70736
2qguA	211	9.619		
1gy7A	125	9.855	d.17.4.2	70738
1qhfA	240	11.15	c.60.1.1	33960
2ckfB	174	11.25		
1o7nB	194	11.71	d.17.4.4	81164
2a22A	215	14.04	d.159.1.7	126025
2qiyA	154	15.20		
1e58A	249	15.82	c.60.1.1	59262
1jkgA	140	18.32	d.17.4.2	66795
1zx2A	147	19.68		
1gybA	125	22.88	d.17.4.2	70744
2qyxA	238	23.75		
2cmgA	262	26.80		
2cw9A	194	28.58	d.17.4.13	130920
1faaA	124	30.31	c.47.1.1	32738
2bo9A	308	30.92	c.56.5.1	128897
1w24A	182	33.53	d.159.1.7	120579
2gv8A	447	33.66	c.3.1.5,c.3.1.5	135759,135760
1riiA	265	38.70	c.60.1.1	111807
1k47A	337	39.10	d.14.1.5,d.58.26.4	72040,72041
2c1cA	312	39.38	c.56.5.1	129630
2ft0A	235	47.26		
1xu9A	286	49.15	c.2.1.2	116052
1m4lA	307	51.76	c.56.5.1	78604
2gs8A	317	53.03		
1wv9A	94	54.62		
2fzpA	144	58.27		
1ujcA	161	58.41		
3bk6A	188	59.04		
1qysA	106	59.65	k.41.1.1	96603
1gheA	177	62.71	d.108.1.1	76222
1nnwA	252	63.39	d.159.1.5	80674
1fmjA	351	63.60	c.37.1.5	59879
2oqxA	467	66.06		
1peaA	385	67.46	c.93.1.1	35662
1bavA	309	68.38	c.56.5.1	33806
1mjnA	179	68.56	c.62.1.1	79210
2uwjG	115	69.04		
2nogA	173	70.47		
1tuaA	191	70.64	d.51.1.1,d.51.1.1	107321,107322
2j6gA	266	77.66		
1z5rA	306	78.18	c.56.5.1	124488
2obiA	183	80.13		
2hhjA	267	80.44	c.60.1.1	136497
1dp4A	435	82.00	c.93.1.1	35710
2i8aA	252	86.65		
1a5zA	319	89.60	c.2.1.5,d.162.1.1	30181,42148