# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	7.90e-15	d.17.4.10	98525
1tuhA	156	9.87e-15	d.17.4.11	107345
2a15A	139	1.26e-14	d.17.4.3	125973
1nwwA	149	1.49e-14	d.17.4.8	86306
2bngA	149	2.51e-14		
1oh0A	131	7.33e-14	d.17.4.3	87004
1sjwA	144	9.02e-14	d.17.4.9	98899
1dmmA	131	2.02e-13	d.17.4.3	38114
1ohpA	125	2.08e-13	d.17.4.3	118702
2geyA	158	1.93e-12		
2gxfA	142	4.81e-08		
2rfrA	155	5.05e-07		
2chcA	170	1.02e-06		
1hkxA	147	1.39e-06	d.17.4.7	83567
3bb9A	148	1.54e-06		
3cnxA	170	2.12e-06		
3cu3A	172	4.19e-06		
2ux0A	143	1.03e-05		
2f86B	143	1.45e-05		
3b7cA	122	3.23e-05		
2r4iA	123	3.82e-05		
3blzA	128	0.000196		
1m98A	317	0.000434	a.175.1.1,d.17.4.6	78866,78867
2rgqA	144	0.001346		
2owpA	129	0.004056		
2b1xB	172	0.03725	d.17.4.4	127677
1tp6A	128	0.07406	d.17.4.12	107184
2imjA	166	0.2185		
1uliB	187	0.8683	d.17.4.4	107923
1idpA	172	1.171	d.17.4.1	83685
1gy7A	125	1.252	d.17.4.2	70738
1zo2A	129	1.821		
2qiyA	154	2.409		
1gy6A	127	3.954	d.17.4.2	70736
2gbwB	174	3.966		
1gybA	125	6.485	d.17.4.2	70744
2bmoB	194	7.201	d.17.4.4	128806
2qyxA	238	7.345		
1jkgA	140	8.641	d.17.4.2	66795
1zx2A	147	12.19		
2cw9A	194	12.68	d.17.4.13	130920
1qysA	106	16.13	k.41.1.1	96603
2cmgA	262	16.67		
1yreA	197	17.99	d.108.1.1	123919
2qguA	211	19.13		
1wv9A	94	23.20		
2nogA	173	25.68		
1e58A	249	28.54	c.60.1.1	59262
1o7nB	194	30.62	d.17.4.4	81164
2ia7A	134	32.97		
2a22A	215	34.56	d.159.1.7	126025
2fxtA	192	34.74		
2z10A	194	35.71		
2fsrA	195	37.72	d.108.1.1	134036
1tuaA	191	39.41	d.51.1.1,d.51.1.1	107321,107322
1w24A	182	42.46	d.159.1.7	120579
1q40B	219	43.26	d.17.4.2	95771
1m3sA	186	49.61	c.80.1.3	78573
1qhfA	240	53.65	c.60.1.1	33960
2vi7A	177	56.01		
1rylA	167	56.56	d.276.1.1	105124
2i8aA	252	57.85		
1bifA	469	58.52	c.37.1.7,c.60.1.4	31961,34003
2gakA	391	64.64		
2fckA	181	65.48	d.108.1.1	133272
2v6xA	85	66.56		
2pftA	571	71.59		
1vhsA	175	72.16	d.108.1.1	100698
3ck2A	176	72.82		
2qruA	274	72.97		
1wfdA	93	73.46	a.7.14.1	114578
1vimA	200	75.88	c.80.1.3	100758
2a6pA	208	78.25		
1tkeA	224	79.11	d.15.10.1,d.67.1.1	112470,112471
2ckfB	174	87.14