# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1tuhA	156	1.83e-05	d.17.4.11	107345
1s5aA	150	3.64e-05	d.17.4.10	98525
1oh0A	131	8.14e-05	d.17.4.3	87004
1nwwA	149	9.57e-05	d.17.4.8	86306
2a15A	139	0.000113	d.17.4.3	125973
1dmmA	131	0.000125	d.17.4.3	38114
1ohpA	125	0.000169	d.17.4.3	118702
2bngA	149	0.000213		
2geyA	158	0.000236		
1sjwA	144	0.001332	d.17.4.9	98899
3cu3A	172	0.01772		
3bb9A	148	0.03308		
3cnxA	170	0.04706		
2gxfA	142	0.06929		
2chcA	170	0.08644		
1hkxA	147	0.1125	d.17.4.7	83567
1m98A	317	0.1139	a.175.1.1,d.17.4.6	78866,78867
2rgqA	144	0.1577		
2rfrA	155	0.2352		
3b7cA	122	0.3706		
2ux0A	143	0.4085		
1uliB	187	0.5175	d.17.4.4	107923
2b1xB	172	0.5639	d.17.4.4	127677
1tp6A	128	0.5905	d.17.4.12	107184
2imjA	166	1.046		
2qiyA	154	2.079		
2gbwB	174	2.366		
1o7nB	194	2.690	d.17.4.4	81164
2r4iA	123	2.883		
2ckfB	174	3.043		
3blzA	128	3.086		
1zo2A	129	3.729		
2f86B	143	4.285		
2owpA	129	4.721		
2bmoB	194	5.705	d.17.4.4	128806
1zx2A	147	7.775		
1of5B	184	10.21	d.17.4.2	86934
1mxgA	435	13.64	b.71.1.1,c.1.8.1	85193,85194
2cw9A	194	14.07	d.17.4.13	130920
2b02A	119	16.66		
2fxtA	192	16.72		
1gy7A	125	17.28	d.17.4.2	70738
1tigA	94	17.52	d.68.1.1	39566
1tig	94	19.21		
2cc3A	150	24.73		
1jkgA	140	25.74	d.17.4.2	66795
1gy6A	127	29.22	d.17.4.2	70736
2elfA	370	32.23		
1q42A	201	33.16	d.17.4.2	95776
1idpA	172	34.47	d.17.4.1	83685
1vqqA	646	36.01	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
1gybA	125	38.39	d.17.4.2	70744
2dxnA	274	41.84		
1jnyA	435	44.62	b.43.3.1,b.44.1.1,c.37.1.8	66982,66983,66984
2yx1A	336	50.64		
1x0oA	119	52.86		
1mtpA	323	54.43	e.1.1.1	85107
3cz8A	319	58.08		
2frnA	278	58.29	c.66.1.47	133993
2pfrA	294	58.72		
2j8gA	339	58.81		
1d9uA	154	60.04	d.2.1.4	59111
2hp7A	183	64.72		
2ijaA	295	66.95		
2bkyX	89	69.77	d.68.6.1	128717
2dpoA	319	78.20		
1vdwA	254	79.57	e.7.1.1	100569
2o09A	189	83.04		
2a14A	263	83.09	c.66.1.15	125972
3bczA	293	83.70		
2hhpA	530	88.90	a.160.1.1,d.218.1.3,d.58.16.1	136503,136504,136505