# List of top-scoring protein chains for T0451.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	6.02e-12	d.17.4.10	98525
1z1sA	163	4.41e-09		
1tuhA	156	1.37e-08	d.17.4.11	107345
1nu3A	149	4.48e-08	d.17.4.8	86170
1nwwA	149	4.48e-08	d.17.4.8	86306
1e97A	131	1.24e-07	d.17.4.3	64803
1dmnA	131	1.26e-07	d.17.4.3	38115
2bngA	149	1.30e-07		
1gs3A	131	1.68e-07	d.17.4.3	76327
1dmqA	131	1.88e-07	d.17.4.3	38116
1dmmA	131	1.89e-07	d.17.4.3	38114
1ohoA	131	2.09e-07	d.17.4.3	118701
2pzvA	131	2.17e-07		
1w6yA	131	2.71e-07	d.17.4.3	120678
1ea2A	131	2.74e-07	d.17.4.3	64860
1oh0A	131	2.81e-07	d.17.4.3	87004
1cqsA	131	3.42e-07	d.17.4.3	83165
1ohsA	125	3.63e-07	d.17.4.3	118706
2a15A	139	3.72e-07	d.17.4.3	125973
1k41A	131	3.87e-07	d.17.4.3	77252
1ohpA	125	4.19e-07	d.17.4.3	118702
1w01A	131	4.55e-07	d.17.4.3	108979
1iskA	125	5.07e-07	d.17.4.3	38109
1vzzA	131	5.10e-07	d.17.4.3	108977
1ocvA	125	5.58e-07	d.17.4.3	86810
1buqA	125	6.83e-07	d.17.4.3	38111
8choA	125	6.90e-07	d.17.4.3	38108
1w02A	131	7.36e-07	d.17.4.3	108981
1c7hA	131	7.64e-07	d.17.4.3	38117
1w00A	131	7.71e-07	d.17.4.3	120554
1ogzA	125	1.11e-06	d.17.4.3	92976
2gexA	152	0.000114		
2geyA	158	0.000525		
1sjwA	144	0.000610	d.17.4.9	98899
2f99A	153	0.01913		
1m98A	317	0.02563	a.175.1.1,d.17.4.6	78866,78867
3b8lA	163	0.04519		
2gxfA	142	0.05454		
2chcA	170	0.07357		
1hkxA	147	0.2486	d.17.4.7	83567
3cu3A	172	0.2548		
3cnxA	170	0.2796		
2rfrA	155	0.6008		
2ux0A	143	0.6506		
2owpA	129	1.389		
1tp6A	128	4.588	d.17.4.12	107184
2gljA	461	6.453		
1wqlB	186	7.461	d.17.4.4	121172
1zo2A	129	10.40		
2piiA	112	11.87	d.58.5.1	39071
2rgqA	144	13.47		
3bb9A	148	13.75		
2r4iA	123	14.05		
1qysA	106	16.15	k.41.1.1	96603
2rcdA	129	18.22		
3b7cA	122	20.67		
2gjhA	62	21.82		
2b1xB	172	21.88	d.17.4.4	127677
2odlA	373	27.25		
2f86B	143	30.13		
1jkgB	250	39.54	d.17.4.2	66796
2gw8A	114	40.21		
1uliB	187	41.85	d.17.4.4	107923
1o1zA	234	47.97	c.1.18.3	86555
2ijqA	161	49.08	a.246.2.1	137481
1dvoA	152	49.13	a.136.1.1	19623
1o6eA	235	70.57	b.57.1.1	81083
2imjA	166	71.56		
2e54A	385	80.06		
2ordA	397	80.22