# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1s5aA 150 3.15e-15 d.17.4.10 98525 2bngA 149 3.16e-14 1nwwA 149 3.26e-14 d.17.4.8 86306 1tuhA 156 7.91e-14 d.17.4.11 107345 2geyA 158 1.05e-13 2a15A 139 2.76e-13 d.17.4.3 125973 1ohpA 125 3.08e-13 d.17.4.3 118702 1dmmA 131 3.99e-13 d.17.4.3 38114 1oh0A 131 4.03e-13 d.17.4.3 87004 1sjwA 144 4.05e-13 d.17.4.9 98899 1opy 131 1.43e-12 1ocvA 125 4.56e-12 d.17.4.3 86810 2rfrA 155 1.31e-07 3cu3A 172 2.08e-07 2gxfA 142 2.75e-07 2r4iA 123 1.51e-06 2chcA 170 1.54e-06 2ux0A 143 2.80e-06 3b7cA 122 8.88e-06 3bb9A 148 1.90e-05 1hkxA 147 2.22e-05 d.17.4.7 83567 3cnxA 170 3.78e-05 2f86B 143 5.89e-05 3blzA 128 0.000337 1tp6A 128 0.009010 d.17.4.12 107184 1m98A 317 0.01540 a.175.1.1,d.17.4.6 78866,78867 2imjA 166 0.06056 2owpA 129 0.06652 2rgqA 144 0.1292 2b1xB 172 0.2664 d.17.4.4 127677 1zx2A 147 0.2776 2gbwB 174 0.8724 2ckfB 174 0.9388 3bczA 293 1.810 1uliB 187 2.134 d.17.4.4 107923 3stdA 165 3.026 d.17.4.1 38073 1gybA 125 3.648 d.17.4.2 70744 1zo2A 129 3.816 1std 172 6.817 1of5B 184 6.971 d.17.4.2 86934 1gy6A 127 7.610 d.17.4.2 70736 2qguA 211 7.876 2esrA 177 10.52 c.66.1.46 132344 2cw9A 194 10.71 d.17.4.13 130920 1gy7A 125 11.76 d.17.4.2 70738 2fckA 181 18.78 d.108.1.1 133272 1tuaA 191 20.04 d.51.1.1,d.51.1.1 107321,107322 1jqgA 433 21.43 c.56.5.1,d.58.3.1 71791,71792 2qiyA 154 27.39 1jkgA 140 27.60 d.17.4.2 66795 1zdrA 164 28.75 2qflA 267 29.89 2b02A 119 30.83 2z10A 194 34.46 1ounA 127 36.32 d.17.4.2 38090 2qyxA 238 36.56 1qysA 106 40.22 k.41.1.1 96603 2o07A 304 40.45 c.66.1.17 138862 2ol2A 395 41.01 2sicI 107 42.75 d.84.1.1 40031 2v95A 371 42.92 2c1cA 312 47.53 c.56.5.1 129630 1x0oA 119 49.81 2db1A 118 52.90 2qsjA 154 53.69 3bbjA 272 56.55 2blcA 238 57.46 2a5hA 416 59.37 1o7nB 194 59.74 d.17.4.4 81164 1yvoA 172 60.77 d.108.1.1 124106 1qlpA 394 61.11 e.1.1.1 42628 1eg9B 194 63.76 d.17.4.4 38120 1qpoA 284 64.85 c.1.17.1,d.41.2.1 29561,38597 1yk3A 210 65.57 d.108.1.1 123493 2bl9A 238 66.43 1l1zA 274 67.09 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 2ia7A 134 67.33 3b9fI 395 69.07 2bo9A 308 72.71 c.56.5.1 128897 1vicA 262 72.80 c.68.1.13 100756 1ra9 159 75.23 1yxaA 398 76.86 1kwmA 402 77.79 c.56.5.1,d.58.3.1 73079,73080 1m4lA 307 79.15 c.56.5.1 78604 2eh6A 375 79.40 2bmoB 194 80.85 d.17.4.4 128806 1efvB 255 82.14 c.26.2.3 31634 2hglA 136 83.84 1obrA 326 84.78 c.56.5.2 33828 1yr0A 175 86.56 d.108.1.1 123905 1ib8A 164 89.96 b.38.2.1,d.52.4.1 71168,71169