# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	7.38e-15	d.17.4.10	98525
1nwwA	149	8.53e-14	d.17.4.8	86306
2bngA	149	1.34e-13		
1tuhA	156	2.81e-13	d.17.4.11	107345
2geyA	158	4.14e-13		
1ohpA	125	5.53e-13	d.17.4.3	118702
2a15A	139	6.82e-13	d.17.4.3	125973
1dmmA	131	7.61e-13	d.17.4.3	38114
1oh0A	131	1.12e-12	d.17.4.3	87004
1sjwA	144	1.14e-12	d.17.4.9	98899
1opy	131	1.68e-12		
1ocvA	125	1.07e-11	d.17.4.3	86810
2rfrA	155	1.93e-07		
3cu3A	172	2.93e-07		
2gxfA	142	2.96e-07		
2chcA	170	2.02e-06		
2r4iA	123	2.03e-06		
2ux0A	143	5.53e-06		
3bb9A	148	1.34e-05		
3b7cA	122	1.45e-05		
1hkxA	147	1.46e-05	d.17.4.7	83567
3cnxA	170	7.65e-05		
2f86B	143	9.66e-05		
3blzA	128	0.000365		
1tp6A	128	0.01611	d.17.4.12	107184
1m98A	317	0.03350	a.175.1.1,d.17.4.6	78866,78867
2imjA	166	0.08441		
2owpA	129	0.1249		
2rgqA	144	0.2562		
1zx2A	147	0.2801		
2b1xB	172	0.4497	d.17.4.4	127677
2ckfB	174	1.071		
2gbwB	174	1.386		
3bczA	293	2.740		
3stdA	165	4.352	d.17.4.1	38073
1zo2A	129	4.667		
1uliB	187	5.696	d.17.4.4	107923
1std	172	7.889		
2cw9A	194	8.274	d.17.4.13	130920
2qguA	211	8.805		
1of5B	184	10.09	d.17.4.2	86934
1gybA	125	11.29	d.17.4.2	70744
2esrA	177	12.23	c.66.1.46	132344
1gy6A	127	12.89	d.17.4.2	70736
2qiyA	154	17.04		
2fckA	181	19.12	d.108.1.1	133272
1jqgA	433	19.24	c.56.5.1,d.58.3.1	71791,71792
1jkgA	140	23.68	d.17.4.2	66795
2qflA	267	26.49		
1gy7A	125	26.88	d.17.4.2	70738
2qyxA	238	28.15		
1tuaA	191	31.87	d.51.1.1,d.51.1.1	107321,107322
1x0oA	119	41.48		
1qysA	106	47.48	k.41.1.1	96603
2db1A	118	47.73		
2z10A	194	48.26		
2b02A	119	48.82		
3bbjA	272	51.95		
2sicI	107	54.65	d.84.1.1	40031
1zdrA	164	56.23		
2v95A	371	58.09		
2fxtA	192	59.71		
1uteA	313	61.64	d.159.1.1	42078
1yvoA	172	61.80	d.108.1.1	124106
2qsjA	154	61.99		
1l1zA	274	62.70	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
1o97D	320	63.15	c.26.2.3,c.31.1.2	81233,81234
1nslA	184	65.18	d.108.1.1	86137
1kwmA	402	67.11	c.56.5.1,d.58.3.1	73079,73080
2blcA	238	67.60		
2c1cA	312	70.98	c.56.5.1	129630
2ol2A	395	71.40		
1yr0A	175	73.84	d.108.1.1	123905
1m4lA	307	74.25	c.56.5.1	78604
1ounA	127	76.47	d.17.4.2	38090
2a5hA	416	78.55		
1on0A	158	78.60	d.108.1.1	87095
1qo8A	566	80.57	a.138.1.3,c.3.1.4,d.168.1.1	19696,30433,42316
2hglA	136	88.54