# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	6.52e-15	d.17.4.10	98525
1nwwA	149	2.92e-14	d.17.4.8	86306
2bngA	149	3.83e-14		
2geyA	158	8.19e-14		
1tuhA	156	8.39e-14	d.17.4.11	107345
1sjwA	144	1.64e-13	d.17.4.9	98899
2a15A	139	3.88e-13	d.17.4.3	125973
1ohpA	125	4.31e-13	d.17.4.3	118702
1dmmA	131	5.20e-13	d.17.4.3	38114
1oh0A	131	5.92e-13	d.17.4.3	87004
1opy	131	1.69e-12		
1ocvA	125	5.76e-12	d.17.4.3	86810
3cu3A	172	1.18e-07		
2rfrA	155	1.78e-07		
2gxfA	142	3.72e-07		
2chcA	170	5.89e-07		
2r4iA	123	8.36e-07		
2ux0A	143	1.15e-06		
1hkxA	147	3.54e-06	d.17.4.7	83567
3b7cA	122	5.37e-06		
2f86B	143	1.07e-05		
3bb9A	148	2.36e-05		
3blzA	128	6.10e-05		
3cnxA	170	9.78e-05		
2imjA	166	0.01911		
1m98A	317	0.02226	a.175.1.1,d.17.4.6	78866,78867
1tp6A	128	0.02907	d.17.4.12	107184
2owpA	129	0.04806		
2rgqA	144	0.06594		
1zx2A	147	0.08850		
2gbwB	174	0.4242		
2b1xB	172	0.6031	d.17.4.4	127677
2ckfB	174	0.8247		
1zo2A	129	0.9277		
1uliB	187	1.744	d.17.4.4	107923
1gybA	125	2.297	d.17.4.2	70744
1gy6A	127	2.334	d.17.4.2	70736
3stdA	165	2.581	d.17.4.1	38073
3bczA	293	2.758		
2qyxA	238	2.995		
1std	172	4.524		
2qiyA	154	4.855		
1gy7A	125	5.454	d.17.4.2	70738
1jkgA	140	9.460	d.17.4.2	66795
2qguA	211	10.11		
1zdrA	164	10.33		
2cw9A	194	11.65	d.17.4.13	130920
2blcA	238	13.02		
1of5B	184	13.93	d.17.4.2	86934
2bl9A	238	18.74		
1tuaA	191	18.90	d.51.1.1,d.51.1.1	107321,107322
1ounA	127	19.23	d.17.4.2	38090
1qysA	106	19.95	k.41.1.1	96603
2z10A	194	25.93		
2qflA	267	27.24		
2esrA	177	27.99	c.66.1.46	132344
2bmoB	194	29.92	d.17.4.4	128806
1jqgA	433	31.33	c.56.5.1,d.58.3.1	71791,71792
2fckA	181	35.82	d.108.1.1	133272
1qpoA	284	40.18	c.1.17.1,d.41.2.1	29561,38597
1x8gA	227	40.80	d.157.1.1	114960
2o07A	304	46.26	c.66.1.17	138862
2ol2A	395	46.84		
2cfuA	658	47.68		
1x0oA	119	49.03		
2db1A	118	51.89		
1o7nB	194	55.49	d.17.4.4	81164
1x8hA	228	56.08	d.157.1.1	114961
1a19A	90	57.08	c.9.1.1	30831
1yvoA	172	60.23	d.108.1.1	124106
1m4lA	307	61.53	c.56.5.1	78604
1eg9B	194	61.83	d.17.4.4	38120
2b02A	119	63.29		
2qdsA	227	68.35		
1yk3A	210	70.20	d.108.1.1	123493
1yr0A	175	74.44	d.108.1.1	123905
1wyzA	242	74.99	c.90.1.1	121471
2v95A	371	77.48		
1kwmA	402	77.83	c.56.5.1,d.58.3.1	73079,73080
1nkrA	201	78.23	b.1.1.4,b.1.1.4	21799,21800
1f9mA	112	79.70	c.47.1.1	32736
1ra9	159	80.44		
1vicA	262	80.93	c.68.1.13	100756
1h8lA	380	81.44	b.3.2.1,c.56.5.1	65737,65738
1m3vA	122	82.29	g.39.1.3,g.39.1.3	84794,84795
1vqqA	646	82.72	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
2bo9A	308	83.83	c.56.5.1	128897