# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	1.42e-15	d.17.4.10	98525
2bngA	149	2.70e-15		
1nwwA	149	7.49e-15	d.17.4.8	86306
1tuhA	156	1.88e-14	d.17.4.11	107345
2geyA	158	3.69e-14		
1oh0A	131	6.18e-14	d.17.4.3	87004
1dmmA	131	6.64e-14	d.17.4.3	38114
1ohpA	125	7.08e-14	d.17.4.3	118702
2a15A	139	8.01e-14	d.17.4.3	125973
1sjwA	144	1.06e-13	d.17.4.9	98899
1opy	131	1.93e-13		
1ocvA	125	1.31e-12	d.17.4.3	86810
3cu3A	172	1.03e-07		
2rfrA	155	1.06e-07		
2gxfA	142	2.58e-07		
2chcA	170	2.76e-07		
2r4iA	123	3.53e-07		
2ux0A	143	6.91e-07		
3b7cA	122	2.99e-06		
1hkxA	147	7.30e-06	d.17.4.7	83567
2f86B	143	2.35e-05		
3bb9A	148	3.81e-05		
3cnxA	170	4.07e-05		
3blzA	128	0.000203		
1m98A	317	0.002594	a.175.1.1,d.17.4.6	78866,78867
1tp6A	128	0.01569	d.17.4.12	107184
2imjA	166	0.03063		
2owpA	129	0.03245		
1zx2A	147	0.1338		
2rgqA	144	0.2366		
2b1xB	172	0.6614	d.17.4.4	127677
2gbwB	174	0.7670		
2ckfB	174	0.9060		
1zo2A	129	2.494		
1uliB	187	3.131	d.17.4.4	107923
3stdA	165	3.202	d.17.4.1	38073
1gybA	125	3.931	d.17.4.2	70744
1std	172	4.053		
1gy6A	127	4.093	d.17.4.2	70736
1qysA	106	5.493	k.41.1.1	96603
3bczA	293	8.756		
2fckA	181	8.789	d.108.1.1	133272
2qguA	211	10.47		
1gy7A	125	11.92	d.17.4.2	70738
2qyxA	238	12.69		
2z10A	194	16.34		
1jkgA	140	18.04	d.17.4.2	66795
1ounA	127	19.20	d.17.4.2	38090
2qiyA	154	20.39		
1yk3A	210	22.76	d.108.1.1	123493
1of5B	184	26.12	d.17.4.2	86934
1zdrA	164	26.58		
2cw9A	194	28.30	d.17.4.13	130920
1a8y	367	28.78		
1rec	201	29.02		
2db1A	118	30.86		
1tuaA	191	32.57	d.51.1.1,d.51.1.1	107321,107322
1z2wA	192	33.46	d.159.1.7	124390
2esrA	177	34.88	c.66.1.46	132344
2blcA	238	35.12		
2ol2A	395	36.96		
1jqgA	433	38.76	c.56.5.1,d.58.3.1	71791,71792
1vhsA	175	41.44	d.108.1.1	100698
2cfuA	658	43.60		
1yr0A	175	43.68	d.108.1.1	123905
3b9fI	395	44.14		
2bl9A	238	46.02		
1yxaA	398	46.03		
2hglA	136	46.46		
1on0A	158	53.13	d.108.1.1	87095
2fsrA	195	55.16	d.108.1.1	134036
2pb2A	420	55.76		
1kwmA	402	57.22	c.56.5.1,d.58.3.1	73079,73080
2qsjA	154	58.96		
1qlpA	394	62.16	e.1.1.1	42628
1w24A	182	62.84	d.159.1.7	120579
1x8gA	227	66.56	d.157.1.1	114960
2o4aA	93	67.18		
2ordA	397	68.45		
1yvoA	172	69.78	d.108.1.1	124106
2sicI	107	73.57	d.84.1.1	40031
1l1zA	274	73.81	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
3b33A	115	75.53		
2eh6A	375	80.52		
1vicA	262	83.58	c.68.1.13	100756
2bo9A	308	83.77	c.56.5.1	128897
1qpoA	284	87.96	c.1.17.1,d.41.2.1	29561,38597