# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	3.06e-15	d.17.4.10	98525
2bngA	149	1.70e-14		
1nwwA	149	2.25e-14	d.17.4.8	86306
1tuhA	156	4.97e-14	d.17.4.11	107345
2geyA	158	5.87e-14		
1dmmA	131	1.50e-13	d.17.4.3	38114
1oh0A	131	1.50e-13	d.17.4.3	87004
2a15A	139	1.52e-13	d.17.4.3	125973
1sjwA	144	1.58e-13	d.17.4.9	98899
1ohpA	125	1.79e-13	d.17.4.3	118702
1opy	131	6.30e-13		
1ocvA	125	3.36e-12	d.17.4.3	86810
2rfrA	155	1.29e-07		
3cu3A	172	2.30e-07		
2gxfA	142	5.56e-07		
2chcA	170	7.97e-07		
2r4iA	123	9.60e-07		
2ux0A	143	2.25e-06		
3b7cA	122	7.24e-06		
1hkxA	147	1.59e-05	d.17.4.7	83567
2f86B	143	4.93e-05		
3bb9A	148	6.10e-05		
3cnxA	170	8.27e-05		
3blzA	128	0.000271		
1m98A	317	0.007823	a.175.1.1,d.17.4.6	78866,78867
1tp6A	128	0.02055	d.17.4.12	107184
2owpA	129	0.06689		
2imjA	166	0.07839		
1zx2A	147	0.1613		
2rgqA	144	0.2788		
2b1xB	172	1.046	d.17.4.4	127677
2gbwB	174	1.636		
2ckfB	174	1.737		
1uliB	187	3.197	d.17.4.4	107923
3bczA	293	4.510		
1zo2A	129	4.801		
3stdA	165	4.929	d.17.4.1	38073
1std	172	5.221		
1gybA	125	5.700	d.17.4.2	70744
1qysA	106	8.089	k.41.1.1	96603
1gy6A	127	8.601	d.17.4.2	70736
2fckA	181	9.428	d.108.1.1	133272
2qguA	211	15.25		
2z10A	194	17.31		
1gy7A	125	18.98	d.17.4.2	70738
1jkgA	140	19.95	d.17.4.2	66795
2cw9A	194	20.41	d.17.4.13	130920
1of5B	184	22.10	d.17.4.2	86934
1zdrA	164	22.94		
2qiyA	154	23.00		
2ol2A	395	23.07		
2esrA	177	25.74	c.66.1.46	132344
3b9fI	395	29.88		
2qsjA	154	34.28		
1yxaA	398	38.97		
2db1A	118	42.77		
1qlpA	394	43.05	e.1.1.1	42628
1ounA	127	44.92	d.17.4.2	38090
1tuaA	191	46.06	d.51.1.1,d.51.1.1	107321,107322
1a8y	367	46.98		
1rec	201	47.72		
1yr0A	175	47.96	d.108.1.1	123905
1yk3A	210	49.62	d.108.1.1	123493
2hglA	136	50.88		
1vhsA	175	56.06	d.108.1.1	100698
2o9pA	454	58.97		
2fsrA	195	59.02	d.108.1.1	134036
2eh6A	375	59.53		
2sicI	107	59.98	d.84.1.1	40031
2bl9A	238	61.41		
1yvoA	172	61.72	d.108.1.1	124106
1jqgA	433	61.79	c.56.5.1,d.58.3.1	71791,71792
1kwmA	402	64.38	c.56.5.1,d.58.3.1	73079,73080
1on0A	158	64.98	d.108.1.1	87095
2pb2A	420	67.79		
2blcA	238	68.35		
2o4aA	93	73.92		
2ordA	397	75.88		
2bmoB	194	81.60	d.17.4.4	128806
3b33A	115	83.35		
1twyA	290	87.92	c.94.1.1	112767
2j8mA	172	89.25