# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	1.30e-15	d.17.4.10	98525
2bngA	149	6.89e-15		
1nwwA	149	1.11e-14	d.17.4.8	86306
1tuhA	156	2.70e-14	d.17.4.11	107345
2geyA	158	3.01e-14		
1dmmA	131	7.16e-14	d.17.4.3	38114
1sjwA	144	7.47e-14	d.17.4.9	98899
1oh0A	131	8.29e-14	d.17.4.3	87004
1ohpA	125	8.48e-14	d.17.4.3	118702
2a15A	139	1.12e-13	d.17.4.3	125973
1opy	131	3.23e-13		
1ocvA	125	2.52e-12	d.17.4.3	86810
2rfrA	155	9.46e-08		
3cu3A	172	1.63e-07		
2gxfA	142	4.03e-07		
2r4iA	123	4.54e-07		
2chcA	170	6.75e-07		
2ux0A	143	1.41e-06		
3b7cA	122	5.08e-06		
1hkxA	147	1.11e-05	d.17.4.7	83567
2f86B	143	2.90e-05		
3bb9A	148	4.99e-05		
3cnxA	170	5.59e-05		
3blzA	128	0.000223		
1m98A	317	0.005965	a.175.1.1,d.17.4.6	78866,78867
1tp6A	128	0.01435	d.17.4.12	107184
2owpA	129	0.05826		
2imjA	166	0.06835		
1zx2A	147	0.1532		
2rgqA	144	0.2437		
2b1xB	172	0.8769	d.17.4.4	127677
2ckfB	174	1.692		
2gbwB	174	1.864		
1uliB	187	3.668	d.17.4.4	107923
3bczA	293	4.556		
1zo2A	129	4.786		
1gybA	125	5.045	d.17.4.2	70744
1std	172	5.442		
3stdA	165	5.613	d.17.4.1	38073
1gy6A	127	6.697	d.17.4.2	70736
1qysA	106	8.735	k.41.1.1	96603
2fckA	181	8.767	d.108.1.1	133272
2qguA	211	15.49		
2z10A	194	16.22		
1gy7A	125	17.49	d.17.4.2	70738
2esrA	177	18.11	c.66.1.46	132344
1jkgA	140	18.28	d.17.4.2	66795
2cw9A	194	18.37	d.17.4.13	130920
1zdrA	164	20.00		
1of5B	184	20.37	d.17.4.2	86934
2qiyA	154	26.67		
1a8y	367	28.54		
2ol2A	395	29.17		
2o9pA	454	33.88		
3b9fI	395	34.59		
1yk3A	210	36.46	d.108.1.1	123493
2db1A	118	36.92		
1ounA	127	39.89	d.17.4.2	38090
1jqgA	433	39.95	c.56.5.1,d.58.3.1	71791,71792
2qsjA	154	41.17		
1rec	201	44.20		
1tuaA	191	44.58	d.51.1.1,d.51.1.1	107321,107322
2hglA	136	45.56		
1yxaA	398	46.70		
1qlpA	394	47.19	e.1.1.1	42628
1vhsA	175	50.55	d.108.1.1	100698
1z2wA	192	51.82	d.159.1.7	124390
2qyxA	238	54.67		
2sicI	107	55.56	d.84.1.1	40031
1yr0A	175	55.78	d.108.1.1	123905
2blcA	238	57.87		
2fsrA	195	59.29	d.108.1.1	134036
2o4aA	93	67.00		
1on0A	158	68.92	d.108.1.1	87095
2bl9A	238	71.61		
1kwmA	402	71.90	c.56.5.1,d.58.3.1	73079,73080
2eh6A	375	74.57		
2ordA	397	74.89		
2p3eA	420	74.98		
1twyA	290	75.29	c.94.1.1	112767
2pb2A	420	76.31		
2jf7A	532	78.43		
1yvoA	172	81.14	d.108.1.1	124106
3b33A	115	84.30		
1qpoA	284	84.49	c.1.17.1,d.41.2.1	29561,38597
1f9mA	112	85.82	c.47.1.1	32736
2j8mA	172	87.71		
2bo9A	308	88.08	c.56.5.1	128897
2ia7A	134	88.40		
2e3zA	465	89.52