# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1s5aA 150 9.10e-15 d.17.4.10 98525 1nwwA 149 2.69e-14 d.17.4.8 86306 2bngA 149 3.20e-14 1tuhA 156 8.91e-14 d.17.4.11 107345 2geyA 158 2.81e-13 1sjwA 144 2.88e-13 d.17.4.9 98899 2a15A 139 3.88e-13 d.17.4.3 125973 1oh0A 131 4.40e-13 d.17.4.3 87004 1ohpA 125 6.60e-13 d.17.4.3 118702 1dmmA 131 1.21e-12 d.17.4.3 38114 1opy 131 1.64e-12 1ocvA 125 2.13e-12 d.17.4.3 86810 3cu3A 172 8.06e-08 2rfrA 155 2.55e-07 2chcA 170 4.33e-07 2gxfA 142 1.12e-06 2ux0A 143 1.48e-06 3bb9A 148 8.54e-06 2r4iA 123 9.93e-06 1hkxA 147 1.75e-05 d.17.4.7 83567 3b7cA 122 2.57e-05 3cnxA 170 6.65e-05 2f86B 143 7.75e-05 3blzA 128 0.000218 1m98A 317 0.02060 a.175.1.1,d.17.4.6 78866,78867 2rgqA 144 0.03037 2imjA 166 0.05968 2owpA 129 0.07969 1zx2A 147 0.1160 2b1xB 172 0.1880 d.17.4.4 127677 1tp6A 128 0.2926 d.17.4.12 107184 1uliB 187 0.6194 d.17.4.4 107923 2ckfB 174 0.6794 2gbwB 174 0.7067 1zo2A 129 0.9900 2qiyA 154 2.105 3stdA 165 2.154 d.17.4.1 38073 1std 172 3.170 1gy6A 127 3.270 d.17.4.2 70736 1gybA 125 3.813 d.17.4.2 70744 2nogA 173 6.441 1gy7A 125 7.283 d.17.4.2 70738 1wlyA 333 8.838 1jkgA 140 8.851 d.17.4.2 66795 2cfuA 658 9.139 1of5B 184 9.363 d.17.4.2 86934 2z10A 194 12.09 2fckA 181 13.07 d.108.1.1 133272 2cw9A 194 13.74 d.17.4.13 130920 2qguA 211 17.24 1tuaA 191 18.55 d.51.1.1,d.51.1.1 107321,107322 2bmoB 194 19.37 d.17.4.4 128806 1h2eA 207 22.34 c.60.1.1 70857 2ia7A 134 22.63 1qysA 106 25.04 k.41.1.1 96603 1yr0A 175 25.59 d.108.1.1 123905 3bczA 293 25.86 1ounA 127 26.05 d.17.4.2 38090 1yk3A 210 26.92 d.108.1.1 123493 2fxtA 192 29.13 1eg9B 194 31.21 d.17.4.4 38120 2qyxA 238 32.01 1o7nB 194 32.57 d.17.4.4 81164 1lfaA 187 41.53 c.62.1.1 34122 1qorA 327 42.16 b.35.1.2,c.2.1.1 24766,29782 2gs8A 317 43.55 4uagA 437 44.50 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1l1zA 274 44.93 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1yb5A 351 48.37 b.35.1.2,c.2.1.1 116601,116602 1h8lA 380 50.78 b.3.2.1,c.56.5.1 65737,65738 2db1A 118 52.39 1vqqA 646 54.01 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 2p75A 177 54.12 1idpA 172 55.63 d.17.4.1 83685 1bif 469 55.86 1yvoA 172 58.07 d.108.1.1 124106 1w24A 182 62.26 d.159.1.7 120579 2nsmA 439 65.15 1kwmA 402 66.16 c.56.5.1,d.58.3.1 73079,73080 1on0A 158 66.60 d.108.1.1 87095 1phnA 162 67.04 a.1.1.3 15641 2gakA 391 67.83 2hfsA 332 69.15 2qmlA 198 69.64 2qsjA 154 70.28 2c1cA 312 75.05 c.56.5.1 129630 1alvA 173 76.81 a.39.1.8 17370 1nslA 184 79.96 d.108.1.1 86137 1jqgA 433 84.05 c.56.5.1,d.58.3.1 71791,71792 1m4lA 307 84.11 c.56.5.1 78604 2v6xA 85 85.33 1dkzA 219 87.81 a.8.4.1,b.130.1.1 90345,90346 1q40B 219 89.52 d.17.4.2 95771