# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	5.76e-15	d.17.4.10	98525
2bngA	149	2.66e-14		
1nwwA	149	4.61e-14	d.17.4.8	86306
1tuhA	156	8.76e-14	d.17.4.11	107345
2geyA	158	1.54e-13		
1ohpA	125	3.27e-13	d.17.4.3	118702
1dmmA	131	3.56e-13	d.17.4.3	38114
1oh0A	131	3.60e-13	d.17.4.3	87004
1sjwA	144	4.77e-13	d.17.4.9	98899
2a15A	139	4.97e-13	d.17.4.3	125973
1opy	131	6.63e-13		
1ocvA	125	2.95e-12	d.17.4.3	86810
3cu3A	172	1.87e-07		
2rfrA	155	3.20e-07		
2gxfA	142	4.45e-07		
2r4iA	123	6.25e-07		
2chcA	170	7.93e-07		
2ux0A	143	1.15e-06		
3b7cA	122	3.25e-06		
1hkxA	147	6.75e-06	d.17.4.7	83567
3bb9A	148	2.20e-05		
2f86B	143	2.77e-05		
3cnxA	170	4.39e-05		
3blzA	128	0.000272		
1tp6A	128	0.01127	d.17.4.12	107184
2imjA	166	0.02570		
2owpA	129	0.04969		
1m98A	317	0.07881	a.175.1.1,d.17.4.6	78866,78867
2rgqA	144	0.1093		
1zx2A	147	0.1527		
2b1xB	172	0.3040	d.17.4.4	127677
2ckfB	174	0.4941		
2gbwB	174	0.5955		
1uliB	187	1.499	d.17.4.4	107923
3stdA	165	1.794	d.17.4.1	38073
1zo2A	129	2.733		
1std	172	3.057		
3bczA	293	3.068		
1gy6A	127	3.873	d.17.4.2	70736
2qguA	211	4.101		
1gybA	125	4.209	d.17.4.2	70744
1gy7A	125	10.40	d.17.4.2	70738
1tuaA	191	11.37	d.51.1.1,d.51.1.1	107321,107322
2qiyA	154	11.94		
2cw9A	194	13.49	d.17.4.13	130920
1of5B	184	16.24	d.17.4.2	86934
1ounA	127	20.13	d.17.4.2	38090
2qflA	267	24.29		
1jkgA	140	28.20	d.17.4.2	66795
2ol2A	395	31.19		
1qysA	106	33.10	k.41.1.1	96603
2z10A	194	33.87		
1yk3A	210	36.59	d.108.1.1	123493
2esrA	177	37.98	c.66.1.46	132344
2bmoB	194	39.88	d.17.4.4	128806
1zdrA	164	39.99		
1h2eA	207	40.69	c.60.1.1	70857
2blcA	238	43.57		
2v95A	371	45.65		
2qyxA	238	47.70		
1juvA	193	51.77	c.71.1.1	90912
1z2wA	192	53.78	d.159.1.7	124390
3bbjA	272	60.25		
1f9mA	112	60.75	c.47.1.1	32736
2bl9A	238	62.30		
1o7nB	194	64.30	d.17.4.4	81164
2db1A	118	66.19		
1qpoA	284	68.82	c.1.17.1,d.41.2.1	29561,38597
1eg9B	194	69.65	d.17.4.4	38120
2fckA	181	69.84	d.108.1.1	133272
2pu9C	111	70.86		
1jqgA	433	75.94	c.56.5.1,d.58.3.1	71791,71792
1l1zA	274	76.67	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
1yvoA	172	77.06	d.108.1.1	124106
1yr0A	175	83.99	d.108.1.1	123905
1twyA	290	88.53	c.94.1.1	112767
2v3aA	384	88.92		
1qlpA	394	89.84	e.1.1.1	42628