# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	1.23e-15	d.17.4.10	98525
2bngA	149	1.30e-14		
1nwwA	149	1.83e-14	d.17.4.8	86306
1tuhA	156	3.30e-14	d.17.4.11	107345
2geyA	158	3.58e-14		
1ohpA	125	9.19e-14	d.17.4.3	118702
1dmmA	131	1.22e-13	d.17.4.3	38114
1oh0A	131	1.35e-13	d.17.4.3	87004
2a15A	139	1.42e-13	d.17.4.3	125973
1sjwA	144	1.73e-13	d.17.4.9	98899
1opy	131	3.04e-13		
1ocvA	125	1.71e-12	d.17.4.3	86810
3cu3A	172	1.24e-07		
2rfrA	155	1.65e-07		
2gxfA	142	3.20e-07		
2chcA	170	5.66e-07		
2r4iA	123	6.12e-07		
2ux0A	143	1.23e-06		
3b7cA	122	4.78e-06		
1hkxA	147	5.49e-06	d.17.4.7	83567
2f86B	143	1.93e-05		
3bb9A	148	2.59e-05		
3cnxA	170	3.23e-05		
3blzA	128	0.000258		
1tp6A	128	0.01029	d.17.4.12	107184
2owpA	129	0.04082		
2imjA	166	0.04167		
1m98A	317	0.07589	a.175.1.1,d.17.4.6	78866,78867
2rgqA	144	0.09119		
1zx2A	147	0.1438		
2b1xB	172	0.4622	d.17.4.4	127677
2ckfB	174	0.6925		
2gbwB	174	1.154		
3stdA	165	1.964	d.17.4.1	38073
1uliB	187	1.996	d.17.4.4	107923
1std	172	2.802		
3bczA	293	3.761		
1zo2A	129	3.808		
2qguA	211	5.434		
1gybA	125	5.698	d.17.4.2	70744
1gy6A	127	8.410	d.17.4.2	70736
2cw9A	194	10.33	d.17.4.13	130920
1of5B	184	15.29	d.17.4.2	86934
2qiyA	154	15.95		
1gy7A	125	19.03	d.17.4.2	70738
1zdrA	164	20.40		
1tuaA	191	20.75	d.51.1.1,d.51.1.1	107321,107322
1jkgA	140	20.84	d.17.4.2	66795
2z10A	194	27.52		
1qysA	106	28.82	k.41.1.1	96603
1yk3A	210	30.48	d.108.1.1	123493
2esrA	177	31.65	c.66.1.46	132344
2fckA	181	33.31	d.108.1.1	133272
2qflA	267	39.38		
2blcA	238	39.97		
1yvoA	172	46.17	d.108.1.1	124106
1h2eA	207	46.80	c.60.1.1	70857
1ounA	127	47.17	d.17.4.2	38090
2v95A	371	53.58		
1yr0A	175	53.65	d.108.1.1	123905
1jqgA	433	57.98	c.56.5.1,d.58.3.1	71791,71792
2ol2A	395	64.55		
2sicI	107	65.44	d.84.1.1	40031
1juvA	193	66.90	c.71.1.1	90912
2bmoB	194	73.76	d.17.4.4	128806
1on0A	158	74.10	d.108.1.1	87095
1qpoA	284	74.27	c.1.17.1,d.41.2.1	29561,38597
2bl9A	238	76.20		
3bbjA	272	78.14		
1o7nB	194	82.06	d.17.4.4	81164
2db1A	118	83.07		
2b02A	119	84.66		
1phnA	162	89.66	a.1.1.3	15641