# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	1.73e-16	d.17.4.10	98525
1nwwA	149	1.42e-15	d.17.4.8	86306
2bngA	149	2.28e-15		
1tuhA	156	6.32e-15	d.17.4.11	107345
2geyA	158	9.53e-15		
2a15A	139	1.69e-14	d.17.4.3	125973
1oh0A	131	1.84e-14	d.17.4.3	87004
1dmmA	131	1.89e-14	d.17.4.3	38114
1sjwA	144	2.09e-14	d.17.4.9	98899
1ohpA	125	2.65e-14	d.17.4.3	118702
1opy	131	6.76e-14		
1ocvA	125	5.32e-13	d.17.4.3	86810
2rfrA	155	3.63e-08		
3cu3A	172	1.02e-07		
2gxfA	142	1.77e-07		
2r4iA	123	3.94e-07		
2chcA	170	4.98e-07		
2ux0A	143	1.06e-06		
3b7cA	122	3.52e-06		
1hkxA	147	3.56e-06	d.17.4.7	83567
2f86B	143	1.61e-05		
3bb9A	148	2.49e-05		
3cnxA	170	3.99e-05		
3blzA	128	7.80e-05		
1tp6A	128	0.02229	d.17.4.12	107184
2owpA	129	0.04882		
1m98A	317	0.07505	a.175.1.1,d.17.4.6	78866,78867
2imjA	166	0.09006		
1zx2A	147	0.1029		
2rgqA	144	0.1574		
2b1xB	172	1.522	d.17.4.4	127677
2ckfB	174	1.680		
2gbwB	174	2.040		
1zo2A	129	3.166		
1gybA	125	5.402	d.17.4.2	70744
1uliB	187	5.631	d.17.4.4	107923
3stdA	165	5.721	d.17.4.1	38073
1std	172	6.151		
1gy6A	127	7.847	d.17.4.2	70736
2cw9A	194	7.882	d.17.4.13	130920
3bczA	293	8.050		
2qguA	211	8.908		
1of5B	184	11.07	d.17.4.2	86934
1zdrA	164	12.51		
1tuaA	191	13.09	d.51.1.1,d.51.1.1	107321,107322
2qiyA	154	15.65		
1jkgA	140	17.28	d.17.4.2	66795
1gy7A	125	18.28	d.17.4.2	70738
2fckA	181	22.10	d.108.1.1	133272
1jqgA	433	22.50	c.56.5.1,d.58.3.1	71791,71792
1qysA	106	25.25	k.41.1.1	96603
2esrA	177	26.52	c.66.1.46	132344
2ol2A	395	29.53		
2blcA	238	34.69		
3b33A	115	37.69		
1yr0A	175	39.67	d.108.1.1	123905
2z10A	194	46.37		
1nslA	184	47.83	d.108.1.1	86137
2v95A	371	48.90		
1juvA	193	49.56	c.71.1.1	90912
2qsjA	154	49.65		
1ounA	127	49.94	d.17.4.2	38090
1yvoA	172	51.34	d.108.1.1	124106
2db1A	118	52.88		
2bl9A	238	54.45		
2hglA	136	55.62		
1h2eA	207	57.05	c.60.1.1	70857
3b9fI	395	57.92		
2j3xA	431	59.78		
2ggcA	263	60.23	d.127.1.1	135127
2qflA	267	60.26		
2fxtA	192	69.31		
1wv9A	94	70.83		
1qlpA	394	71.82	e.1.1.1	42628
1kwmA	402	73.98	c.56.5.1,d.58.3.1	73079,73080
3bbjA	272	77.18		
2sicI	107	77.28	d.84.1.1	40031
2p75A	177	79.01		
1on0A	158	81.35	d.108.1.1	87095
2o4aA	93	83.19		
1q40B	219	88.34	d.17.4.2	95771
1nkrA	201	88.78	b.1.1.4,b.1.1.4	21799,21800
1yxaA	398	89.95