# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	2.73e-15	d.17.4.10	98525
1nwwA	149	3.16e-14	d.17.4.8	86306
2bngA	149	5.24e-14		
1tuhA	156	6.28e-14	d.17.4.11	107345
2geyA	158	1.09e-13		
1sjwA	144	1.49e-13	d.17.4.9	98899
2a15A	139	1.56e-13	d.17.4.3	125973
1dmmA	131	1.76e-13	d.17.4.3	38114
1oh0A	131	1.95e-13	d.17.4.3	87004
1ohpA	125	1.95e-13	d.17.4.3	118702
1opy	131	6.01e-13		
1ocvA	125	2.58e-12	d.17.4.3	86810
2rfrA	155	1.36e-07		
3cu3A	172	1.91e-07		
2gxfA	142	8.57e-07		
2r4iA	123	9.31e-07		
2chcA	170	1.09e-06		
2ux0A	143	2.03e-06		
1hkxA	147	4.52e-06	d.17.4.7	83567
3b7cA	122	8.19e-06		
2f86B	143	2.31e-05		
3bb9A	148	4.68e-05		
3cnxA	170	8.19e-05		
3blzA	128	0.000158		
2imjA	166	0.03598		
1m98A	317	0.04728	a.175.1.1,d.17.4.6	78866,78867
1tp6A	128	0.04957	d.17.4.12	107184
2owpA	129	0.05714		
1zx2A	147	0.1204		
2rgqA	144	0.1350		
2b1xB	172	0.9370	d.17.4.4	127677
2ckfB	174	1.365		
2gbwB	174	1.662		
1uliB	187	1.811	d.17.4.4	107923
1zo2A	129	2.343		
3stdA	165	4.663	d.17.4.1	38073
1std	172	5.083		
3bczA	293	5.201		
1gybA	125	5.736	d.17.4.2	70744
2qguA	211	7.962		
1gy6A	127	9.457	d.17.4.2	70736
2qiyA	154	11.01		
2cw9A	194	13.73	d.17.4.13	130920
1gy7A	125	15.62	d.17.4.2	70738
1of5B	184	17.83	d.17.4.2	86934
1jkgA	140	20.29	d.17.4.2	66795
1zdrA	164	21.20		
2qyxA	238	22.24		
1tuaA	191	26.64	d.51.1.1,d.51.1.1	107321,107322
1jqgA	433	28.58	c.56.5.1,d.58.3.1	71791,71792
2fckA	181	36.08	d.108.1.1	133272
1qysA	106	38.14	k.41.1.1	96603
2blcA	238	53.58		
2esrA	177	55.19	c.66.1.46	132344
2j3xA	431	59.46		
2bl9A	238	61.55		
1on0A	158	66.49	d.108.1.1	87095
2qflA	267	68.94		
1yvoA	172	73.02	d.108.1.1	124106
1ounA	127	73.60	d.17.4.2	38090
1m3vA	122	74.02	g.39.1.3,g.39.1.3	84794,84795
2bmoB	194	74.56	d.17.4.4	128806
1h2eA	207	74.75	c.60.1.1	70857
1yk3A	210	77.84	d.108.1.1	123493
2c1cA	312	80.82	c.56.5.1	129630
2v95A	371	83.15		
2sicI	107	83.71	d.84.1.1	40031
2bo9A	308	85.15	c.56.5.1	128897
1m4lA	307	85.56	c.56.5.1	78604
2z10A	194	87.31