# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	5.42e-14	d.17.4.10	98525
1nwwA	149	8.81e-14	d.17.4.8	86306
2bngA	149	1.92e-13		
1sjwA	144	5.78e-13	d.17.4.9	98899
1tuhA	156	6.50e-13	d.17.4.11	107345
2a15A	139	9.32e-13	d.17.4.3	125973
1ohpA	125	1.22e-12	d.17.4.3	118702
1oh0A	131	1.58e-12	d.17.4.3	87004
1dmmA	131	3.89e-12	d.17.4.3	38114
1opy	131	6.14e-12		
2geyA	158	1.15e-11		
1ocvA	125	1.18e-11	d.17.4.3	86810
2rfrA	155	3.01e-07		
3cu3A	172	3.48e-07		
2chcA	170	1.56e-06		
2gxfA	142	3.94e-06		
2ux0A	143	4.79e-06		
1hkxA	147	3.27e-05	d.17.4.7	83567
2r4iA	123	3.65e-05		
3bb9A	148	7.96e-05		
3cnxA	170	9.84e-05		
3b7cA	122	0.000168		
2f86B	143	0.000229		
3blzA	128	0.000238		
1m98A	317	0.05338	a.175.1.1,d.17.4.6	78866,78867
2rgqA	144	0.07754		
2imjA	166	0.1875		
1zx2A	147	0.2742		
2owpA	129	0.3742		
2b1xB	172	0.5604	d.17.4.4	127677
1tp6A	128	0.6544	d.17.4.12	107184
2ckfB	174	0.9925		
2gbwB	174	1.249		
1uliB	187	2.026	d.17.4.4	107923
2qguA	211	4.021		
3stdA	165	4.060	d.17.4.1	38073
1std	172	4.754		
1zo2A	129	5.507		
1gy6A	127	12.66	d.17.4.2	70736
2fckA	181	12.94	d.108.1.1	133272
2cw9A	194	15.27	d.17.4.13	130920
1gybA	125	15.70	d.17.4.2	70744
2qiyA	154	18.36		
2bo9A	308	18.54	c.56.5.1	128897
1jqgA	433	21.86	c.56.5.1,d.58.3.1	71791,71792
1of5B	184	23.79	d.17.4.2	86934
1gy7A	125	27.63	d.17.4.2	70738
2fxtA	192	30.75		
2z10A	194	31.16		
4uagA	437	31.21	c.5.1.1,c.59.1.1,c.72.2.1	30651,33952,34955
2qflA	267	31.41		
2cfuA	658	32.05		
2qyxA	238	32.61		
2bmoB	194	35.07	d.17.4.4	128806
3bczA	293	35.99		
1h8lA	380	36.45	b.3.2.1,c.56.5.1	65737,65738
1e3dB	542	38.07	e.18.1.1	59189
2pg9A	337	38.81		
1jkgA	140	41.47	d.17.4.2	66795
2p75A	177	42.67		
1tuaA	191	43.20	d.51.1.1,d.51.1.1	107321,107322
1m4lA	307	43.65	c.56.5.1	78604
1f9mA	112	48.46	c.47.1.1	32736
1alvA	173	51.43	a.39.1.8	17370
1ug3A	339	52.00	a.118.1.14,a.118.1.14	119671,119672
2hhjA	267	53.66	c.60.1.1	136497
2db1A	118	56.08		
1riiA	265	56.31	c.60.1.1	111807
1kwmA	402	58.01	c.56.5.1,d.58.3.1	73079,73080
1bavA	309	58.30	c.56.5.1	33806
2hfsA	332	58.84		
2ctc	307	60.14		
2nsmA	439	61.13		
1qhfA	240	63.16	c.60.1.1	33960
1obrA	326	65.65	c.56.5.2	33828
2novA	496	67.21		
1h2eA	207	68.52	c.60.1.1	70857
2c1cA	312	69.08	c.56.5.1	129630
2pw4A	188	69.68		
2hglA	136	71.31		
1kkhA	317	71.52	d.14.1.5,d.58.26.3	72645,72646
2ia7A	134	71.60		
2gakA	391	71.92		
1y1xA	191	73.42	a.39.1.8	116374
2nogA	173	74.10		
2j3xA	431	75.01		
1m3vA	122	75.11	g.39.1.3,g.39.1.3	84794,84795
1w18A	493	77.85		
1io7A	368	85.93	a.104.1.1	18971