# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	2.64e-15	d.17.4.10	98525
1nwwA	149	3.61e-14	d.17.4.8	86306
2bngA	149	3.90e-14		
1tuhA	156	7.57e-14	d.17.4.11	107345
1sjwA	144	2.55e-13	d.17.4.9	98899
2a15A	139	2.79e-13	d.17.4.3	125973
2geyA	158	2.93e-13		
1oh0A	131	2.94e-13	d.17.4.3	87004
1ohpA	125	3.79e-13	d.17.4.3	118702
1dmmA	131	4.34e-13	d.17.4.3	38114
1opy	131	2.30e-12		
1ocvA	125	4.59e-12	d.17.4.3	86810
2rfrA	155	6.65e-08		
3cu3A	172	1.57e-07		
2gxfA	142	2.38e-07		
2chcA	170	5.97e-07		
2ux0A	143	1.89e-06		
2r4iA	123	3.26e-06		
3b7cA	122	4.72e-06		
1hkxA	147	6.35e-06	d.17.4.7	83567
3bb9A	148	1.97e-05		
2f86B	143	2.05e-05		
3cnxA	170	4.97e-05		
3blzA	128	0.000321		
1m98A	317	0.01970	a.175.1.1,d.17.4.6	78866,78867
2rgqA	144	0.05829		
2owpA	129	0.07870		
1zx2A	147	0.1064		
1tp6A	128	0.1957	d.17.4.12	107184
2b1xB	172	0.2082	d.17.4.4	127677
2imjA	166	0.3449		
2ckfB	174	0.3919		
2gbwB	174	0.8363		
1gy6A	127	1.596	d.17.4.2	70736
3stdA	165	1.972	d.17.4.1	38073
1zo2A	129	2.071		
1gybA	125	2.096	d.17.4.2	70744
1uliB	187	2.205	d.17.4.4	107923
2qiyA	154	2.299		
1gy7A	125	2.709	d.17.4.2	70738
1std	172	3.244		
2qyxA	238	7.938		
2cw9A	194	9.623	d.17.4.13	130920
1jkgA	140	10.45	d.17.4.2	66795
2db1A	118	13.37		
1tuaA	191	14.73	d.51.1.1,d.51.1.1	107321,107322
2qguA	211	14.83		
1qysA	106	15.24	k.41.1.1	96603
1ounA	127	17.07	d.17.4.2	38090
2qflA	267	18.16		
2fckA	181	19.84	d.108.1.1	133272
2nogA	173	22.07		
1of5B	184	22.50	d.17.4.2	86934
1h2eA	207	23.22	c.60.1.1	70857
2p75A	177	25.05		
2gakA	391	28.89		
2z10A	194	29.09		
2bmoB	194	29.38	d.17.4.4	128806
1bif	469	31.96		
2hglA	136	32.19		
2qsjA	154	32.24		
1w24A	182	33.55	d.159.1.7	120579
2qniA	219	35.12		
1vimA	200	35.96	c.80.1.3	100758
3bczA	293	37.74		
1m3sA	186	41.24	c.80.1.3	78573
1q40B	219	42.55	d.17.4.2	95771
2p3nA	256	45.45		
1o7nB	194	50.03	d.17.4.4	81164
2nsmA	439	50.07		
1eg9B	194	51.52	d.17.4.4	38120
1h8lA	380	57.16	b.3.2.1,c.56.5.1	65737,65738
1jqgA	433	63.11	c.56.5.1,d.58.3.1	71791,71792
1yvoA	172	65.38	d.108.1.1	124106
1nnwA	252	66.87	d.159.1.5	80674
2ia7A	134	70.96		
2fsrA	195	71.14	d.108.1.1	134036
1g0hA	252	73.31	e.7.1.1	60171
2cfuA	658	73.74		
1on0A	158	73.93	d.108.1.1	87095
1m3vA	122	77.32	g.39.1.3,g.39.1.3	84794,84795
1wv9A	94	81.24		
1yr0A	175	84.53	d.108.1.1	123905
2j3xA	431	88.50