# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	8.13e-05	d.17.4.10	98525
1tuhA	156	0.000274	d.17.4.11	107345
1nwwA	149	0.000338	d.17.4.8	86306
2geyA	158	0.000426		
1oh0A	131	0.000551	d.17.4.3	87004
2bngA	149	0.000608		
1ohpA	125	0.000844	d.17.4.3	118702
1dmmA	131	0.001071	d.17.4.3	38114
1opy	131	0.001155		
2a15A	139	0.001319	d.17.4.3	125973
1ocvA	125	0.001934	d.17.4.3	86810
1sjwA	144	0.005642	d.17.4.9	98899
3cu3A	172	0.01869		
2chcA	170	0.05376		
3bb9A	148	0.1613		
2gxfA	142	0.1644		
2ux0A	143	0.1668		
2rfrA	155	0.2637		
3cnxA	170	0.3788		
1hkxA	147	0.4579	d.17.4.7	83567
1m98A	317	0.5434	a.175.1.1,d.17.4.6	78866,78867
2rgqA	144	0.5451		
1tp6A	128	0.8859	d.17.4.12	107184
2ckfB	174	0.9836		
3b7cA	122	1.085		
2gbwB	174	1.324		
2r4iA	123	1.532		
1uliB	187	1.533	d.17.4.4	107923
2b1xB	172	2.088	d.17.4.4	127677
2f86B	143	2.182		
2imjA	166	3.469		
2owpA	129	4.958		
3blzA	128	5.668		
2qiyA	154	5.912		
1zx2A	147	6.209		
1of5B	184	7.574	d.17.4.2	86934
1eg9B	194	8.317	d.17.4.4	38120
1o7nB	194	8.784	d.17.4.4	81164
1zo2A	129	9.721		
2bmoB	194	10.50	d.17.4.4	128806
2fxtA	192	21.23		
1gy6A	127	21.89	d.17.4.2	70736
1tigA	94	22.06	d.68.1.1	39566
1tig	94	22.78		
1jkgA	140	27.02	d.17.4.2	66795
3bczA	293	27.10		
1mxgA	435	32.50	b.71.1.1,c.1.8.1	85193,85194
1ounA	127	32.83	d.17.4.2	38090
2cw9A	194	34.12	d.17.4.13	130920
2axoA	270	36.16	c.47.1.19	127496
2hp7A	183	40.03		
1dar	691	42.78		
2esrA	177	53.36	c.66.1.46	132344
1d9uA	154	54.95	d.2.1.4	59111
2b02A	119	56.69		
1j5uA	136	67.94	d.208.1.1	71584
3stdA	165	69.34	d.17.4.1	38073
1gy7A	125	70.56	d.17.4.2	70738
2bkyX	89	72.36	d.68.6.1	128717
1p0zA	131	77.17	d.110.6.1	93882
2i62A	265	77.72		
1gybA	125	80.53	d.17.4.2	70744
1jnyA	435	81.32	b.43.3.1,b.44.1.1,c.37.1.8	66982,66983,66984
1imbA	277	85.28	e.7.1.1	42957
1h2rL	534	87.00	e.18.1.1	43298
3cz8A	319	87.61		
2o09A	189	88.11		
2v3aA	384	89.69