Best Alignments for T0449

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1snzA/T0449-1snzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1snzA/T0449-1snzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3206e-241.05e-130 b.30.5.4
2cirA/T0449-2cirA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cirA/T0449-2cirA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.2800e-231.10e-85
2htaA/T0449-2htaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2htaA/T0449-2htaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7840e-211.97e-81
1ygaA/T0449-1ygaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ygaA/T0449-1ygaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.4133e-183.90e-104
1z45A/T0449-1z45A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1z45A/T0449-1z45A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.9008e-176.98e-99 b.30.5.4
c.2.1.2
1jovA/T0449-1jovA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jovA/T0449-1jovA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.6025e-162.00e-75 b.30.5.7
3bs6A/T0449-3bs6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3bs6A/T0449-3bs6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6816e-021.32e-27
3blcA/T0449-3blcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3blcA/T0449-3blcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.9059e-021.16e-28
1o7dD/T0449-1o7dD-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1o7dD/T0449-1o7dD-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3787e+004.08e-20
1jz8A/T0449-1jz8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jz8A/T0449-1jz8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.0743e+004.44e-23 b.1.4.1
b.1.4.1
b.18.1.5
b.30.5.1
c.1.8.3

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001