# This file is the result of combining several RDB files, specifically # T0449.t04.dssp-ebghstl.rdb (weight 1.53986) # T0449.t04.stride-ebghtl.rdb (weight 1.24869) # T0449.t04.str2.rdb (weight 1.54758) # T0449.t04.alpha.rdb (weight 0.659012) # These files were combined by translating their predictions into EHL # predictions with tables generated by compare-real, and then combining # those predictions with weights proportional to their mutual information # with the EHL alphabet. The comments from the individual files follow. # # Comments from T0449.t04.dssp-ebghstl.rdb # ============================================ # TARGET T0449 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0449.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1138 # # ============================================ # Comments from T0449.t04.stride-ebghtl.rdb # ============================================ # TARGET T0449 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0449.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1138 # # ============================================ # Comments from T0449.t04.str2.rdb # ============================================ # TARGET T0449 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0449.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1138 # # ============================================ # Comments from T0449.t04.alpha.rdb # ============================================ # TARGET T0449 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-alpha-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 ABCDEFGHIST ) # The input amino acid frequencies were determined from # alignment T0449.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1138 # # ============================================ Pos AA E H C 10N 1S 5N 5N 5N 1 M 0.2698 0.0067 0.7235 2 D 0.8345 0.0045 0.1610 3 Y 0.9054 0.0036 0.0910 4 T 0.9238 0.0035 0.0726 5 I 0.9070 0.0042 0.0888 6 E 0.7974 0.0178 0.1848 7 N 0.3682 0.0238 0.6079 8 N 0.0908 0.0711 0.8381 9 M 0.3030 0.0256 0.6714 10 I 0.8137 0.0049 0.1814 11 K 0.9132 0.0044 0.0824 12 V 0.9251 0.0034 0.0715 13 V 0.9253 0.0036 0.0711 14 I 0.8980 0.0052 0.0969 15 S 0.6876 0.0238 0.2886 16 D 0.3451 0.0768 0.5781 17 H 0.1907 0.0654 0.7439 18 G 0.3527 0.0396 0.6077 19 A 0.6586 0.0079 0.3335 20 E 0.8937 0.0050 0.1013 21 I 0.9124 0.0030 0.0845 22 Q 0.8718 0.0196 0.1086 23 S 0.9090 0.0038 0.0872 24 V 0.9042 0.0047 0.0911 25 K 0.8527 0.0072 0.1401 26 S 0.5014 0.0203 0.4784 27 A 0.0768 0.0680 0.8552 28 H 0.0520 0.0348 0.9132 29 T 0.1701 0.0321 0.7978 30 D 0.3122 0.0294 0.6584 31 E 0.6310 0.0785 0.2905 32 E 0.7135 0.0818 0.2048 33 F 0.6739 0.0965 0.2295 34 M 0.5808 0.0837 0.3355 35 W 0.4612 0.1056 0.4332 36 Q 0.2815 0.1224 0.5961 37 A 0.1409 0.1059 0.7533 38 N 0.1034 0.0716 0.8249 39 P 0.0274 0.4986 0.4740 40 E 0.0402 0.5563 0.4035 41 I 0.0954 0.5346 0.3701 42 W 0.0866 0.3482 0.5652 43 G 0.0547 0.1548 0.7905 44 R 0.0750 0.1082 0.8168 45 H 0.0910 0.0633 0.8457 46 A 0.1309 0.0386 0.8304 47 P 0.3183 0.0536 0.6281 48 V 0.6544 0.0595 0.2861 49 L 0.6985 0.0578 0.2437 50 F 0.6023 0.0449 0.3529 51 P 0.5492 0.0754 0.3755 52 I 0.4676 0.1497 0.3826 53 V 0.3816 0.1710 0.4474 54 G 0.2931 0.1303 0.5767 55 R 0.3758 0.1082 0.5160 56 L 0.3027 0.0783 0.6189 57 K 0.1535 0.0936 0.7529 58 N 0.0751 0.0550 0.8699 59 D 0.1292 0.0592 0.8116 60 E 0.5130 0.0337 0.4534 61 Y 0.8120 0.0114 0.1767 62 T 0.6960 0.0189 0.2851 63 Y 0.6075 0.0365 0.3560 64 K 0.1430 0.0380 0.8190 65 G 0.0915 0.0328 0.8757 66 K 0.6245 0.0124 0.3631 67 T 0.8596 0.0084 0.1321 68 Y 0.8013 0.0094 0.1894 69 H 0.7135 0.0126 0.2739 70 L 0.4282 0.0580 0.5138 71 G 0.2202 0.1028 0.6770 72 Q 0.1440 0.1662 0.6899 73 H 0.1604 0.1403 0.6993 74 G 0.1427 0.1446 0.7127 75 F 0.2193 0.1491 0.6316 76 A 0.2319 0.1869 0.5812 77 R 0.1748 0.1894 0.6358 78 N 0.1215 0.1070 0.7716 79 A 0.1769 0.0553 0.7677 80 D 0.2866 0.0465 0.6669 81 F 0.5507 0.0194 0.4299 82 E 0.8255 0.0099 0.1646 83 V 0.8933 0.0075 0.0992 84 E 0.8318 0.0238 0.1445 85 N 0.8232 0.0092 0.1676 86 H 0.6866 0.0188 0.2945 87 T 0.4403 0.0204 0.5393 88 K 0.0968 0.1381 0.7651 89 E 0.1260 0.1119 0.7621 90 S 0.7011 0.0299 0.2689 91 I 0.8899 0.0040 0.1061 92 T 0.9276 0.0034 0.0690 93 F 0.9235 0.0035 0.0729 94 L 0.9160 0.0036 0.0804 95 L 0.8937 0.0042 0.1020 96 K 0.7075 0.0106 0.2819 97 D 0.3303 0.0104 0.6593 98 N 0.0746 0.1139 0.8115 99 E 0.0158 0.4101 0.5741 100 E 0.0373 0.4682 0.4945 101 T 0.0885 0.4950 0.4165 102 R 0.1700 0.4448 0.3852 103 K 0.2213 0.2974 0.4813 104 V 0.2610 0.1619 0.5772 105 Y 0.3069 0.0296 0.6636 106 P 0.2361 0.0648 0.6992 107 F 0.4158 0.0347 0.5495 108 K 0.6464 0.0144 0.3392 109 F 0.8471 0.0044 0.1485 110 E 0.9167 0.0033 0.0801 111 F 0.9245 0.0033 0.0722 112 R 0.9259 0.0033 0.0707 113 V 0.9257 0.0033 0.0710 114 N 0.9242 0.0036 0.0722 115 Y 0.9260 0.0037 0.0702 116 N 0.9217 0.0039 0.0745 117 L 0.8716 0.0059 0.1224 118 M 0.5165 0.0234 0.4601 119 N 0.0687 0.0550 0.8763 120 N 0.0879 0.0448 0.8673 121 L 0.6331 0.0246 0.3423 122 L 0.8677 0.0042 0.1280 123 E 0.9003 0.0045 0.0951 124 E 0.9134 0.0037 0.0829 125 N 0.9110 0.0039 0.0851 126 F 0.9193 0.0035 0.0773 127 S 0.9193 0.0035 0.0772 128 V 0.9226 0.0033 0.0741 129 V 0.8803 0.0075 0.1122 130 N 0.6185 0.0080 0.3735 131 K 0.1641 0.0562 0.7797 132 S 0.0705 0.0429 0.8866 133 D 0.0631 0.0629 0.8740 134 E 0.1467 0.0347 0.8187 135 T 0.3562 0.0294 0.6144 136 M 0.5930 0.0296 0.3774 137 I 0.6815 0.0356 0.2829 138 F 0.6505 0.0792 0.2703 139 G 0.5585 0.1042 0.3372 140 V 0.3767 0.1528 0.4705 141 G 0.3646 0.1065 0.5289 142 G 0.2243 0.0913 0.6844 143 H 0.1721 0.1106 0.7173 144 P 0.0986 0.2339 0.6674 145 G 0.1281 0.2283 0.6436 146 F 0.3087 0.1363 0.5550 147 N 0.2913 0.0621 0.6466 148 L 0.1642 0.0286 0.8072 149 P 0.1638 0.0435 0.7927 150 T 0.1145 0.1022 0.7833 151 D 0.0741 0.1090 0.8169 152 H 0.0580 0.1135 0.8286 153 G 0.0745 0.0667 0.8587 154 E 0.1368 0.0595 0.8036 155 N 0.1741 0.0342 0.7917 156 K 0.1158 0.3982 0.4860 157 E 0.1430 0.2937 0.5633 158 D 0.3429 0.1619 0.4952 159 F 0.7497 0.0109 0.2394 160 Y 0.8954 0.0047 0.0999 161 F 0.9081 0.0042 0.0877 162 D 0.8821 0.0038 0.1141 163 M 0.7152 0.0081 0.2767 164 H 0.3430 0.0130 0.6440 165 P 0.0723 0.2347 0.6930 166 S 0.0629 0.1920 0.7451 167 V 0.2226 0.1779 0.5995 168 T 0.4046 0.0642 0.5312 169 R 0.5617 0.0641 0.3742 170 V 0.5814 0.0666 0.3520 171 R 0.5049 0.0534 0.4417 172 I 0.2568 0.0273 0.7159 173 P 0.2013 0.0551 0.7436 174 L 0.1746 0.0874 0.7380 175 K 0.1251 0.1161 0.7588 176 D 0.1475 0.1708 0.6817 177 A 0.2367 0.2009 0.5624 178 S 0.3184 0.1613 0.5203 179 L 0.3538 0.0882 0.5580 180 D 0.2755 0.0714 0.6531 181 W 0.1593 0.2169 0.6238 182 N 0.0853 0.1542 0.7605 183 N 0.0673 0.0999 0.8329 184 R 0.1526 0.0431 0.8043 185 S 0.2639 0.0535 0.6826 186 L 0.2354 0.0801 0.6846 187 A 0.1876 0.0490 0.7634 188 P 0.1660 0.0721 0.7619 189 T 0.1001 0.1829 0.7169 190 D 0.0844 0.2307 0.6849 191 S 0.1385 0.1784 0.6831 192 L 0.2348 0.1333 0.6319 193 I 0.4613 0.0797 0.4590 194 A 0.4923 0.0602 0.4475 195 L 0.2443 0.1130 0.6427 196 S 0.1433 0.1088 0.7479 197 D 0.0482 0.4035 0.5482 198 D 0.0697 0.3610 0.5693 199 L 0.1318 0.3132 0.5550 200 F 0.2806 0.1316 0.5877 201 K 0.2022 0.1224 0.6754 202 D 0.1407 0.1410 0.7183 203 D 0.2337 0.1174 0.6489 204 A 0.6202 0.0668 0.3130 205 L 0.8140 0.0338 0.1522 206 I 0.8153 0.0373 0.1475 207 Y 0.6686 0.0438 0.2877 208 E 0.4306 0.0774 0.4920 209 L 0.2750 0.1065 0.6185 210 R 0.1456 0.1027 0.7517 211 G 0.0877 0.0674 0.8449 212 N 0.0960 0.0664 0.8377 213 D 0.1322 0.0627 0.8052 214 N 0.3120 0.0292 0.6588 215 K 0.7450 0.0114 0.2436 216 V 0.9018 0.0039 0.0943 217 S 0.9229 0.0038 0.0733 218 L 0.9252 0.0034 0.0714 219 R 0.9069 0.0053 0.0878 220 T 0.7579 0.0078 0.2344 221 D 0.0514 0.0993 0.8493 222 K 0.0296 0.1011 0.8693 223 N 0.0698 0.0490 0.8812 224 K 0.1574 0.0233 0.8194 225 F 0.7039 0.0048 0.2912 226 H 0.9131 0.0035 0.0835 227 V 0.9238 0.0034 0.0728 228 N 0.9276 0.0033 0.0691 229 V 0.9158 0.0036 0.0806 230 W 0.8633 0.0046 0.1321 231 T 0.6386 0.0168 0.3446 232 R 0.1976 0.0522 0.7502 233 D 0.0895 0.0370 0.8735 234 A 0.2138 0.0200 0.7662 235 P 0.2766 0.0328 0.6906 236 F 0.7951 0.0142 0.1907 237 V 0.9039 0.0051 0.0910 238 G 0.9240 0.0044 0.0716 239 I 0.9209 0.0043 0.0748 240 W 0.8363 0.0129 0.1508 241 S 0.4590 0.0141 0.5269 242 Q 0.1334 0.0576 0.8090 243 Y 0.1017 0.0382 0.8601 244 P 0.0584 0.1030 0.8386 245 K 0.0447 0.1434 0.8119 246 T 0.0635 0.1196 0.8169 247 D 0.0876 0.0632 0.8493 248 N 0.1432 0.0640 0.7928 249 Y 0.6108 0.0331 0.3561 250 V 0.8087 0.0212 0.1701 251 C 0.8336 0.0154 0.1510 252 I 0.7156 0.0252 0.2591 253 E 0.3942 0.0276 0.5782 254 P 0.1976 0.0915 0.7109 255 W 0.1447 0.1192 0.7361 256 W 0.1299 0.1230 0.7470 257 G 0.1145 0.0937 0.7918 258 I 0.1181 0.0812 0.8007 259 A 0.1328 0.1027 0.7645 260 D 0.1134 0.0767 0.8100 261 R 0.0536 0.2372 0.7092 262 D 0.0500 0.2464 0.7036 263 D 0.0695 0.1699 0.7607 264 A 0.0461 0.3191 0.6347 265 D 0.0578 0.4105 0.5317 266 G 0.0425 0.5202 0.4373 267 D 0.0711 0.5515 0.3773 268 L 0.0946 0.5583 0.3472 269 E 0.0851 0.4895 0.4255 270 H 0.0730 0.3611 0.5659 271 K 0.0770 0.2020 0.7210 272 Y 0.1025 0.0952 0.8023 273 G 0.1149 0.0529 0.8322 274 M 0.2983 0.0600 0.6417 275 N 0.5347 0.0447 0.4206 276 H 0.7257 0.0237 0.2506 277 L 0.4959 0.0117 0.4924 278 K 0.1293 0.0147 0.8560 279 P 0.0290 0.0568 0.9142 280 G 0.0287 0.0383 0.9330 281 K 0.3129 0.0195 0.6677 282 E 0.7629 0.0061 0.2310 283 F 0.8788 0.0048 0.1164 284 Q 0.8749 0.0049 0.1202 285 A 0.8538 0.0048 0.1413 286 G 0.8781 0.0041 0.1179 287 F 0.9156 0.0037 0.0807 288 S 0.9274 0.0034 0.0692 289 M 0.9241 0.0035 0.0724 290 T 0.9192 0.0039 0.0769 291 Y 0.9008 0.0049 0.0943 292 H 0.7401 0.0095 0.2503 293 S 0.5279 0.0212 0.4509 294 T 0.2407 0.0563 0.7030 295 T 0.1012 0.3045 0.5943 296 D 0.0844 0.3309 0.5847 297 E 0.2413 0.3164 0.4424 298 V 0.4124 0.0843 0.5033 299 K 0.4054 0.0680 0.5267 300 L 0.3749 0.2621 0.3630 301 E 0.3029 0.2661 0.4310 302 H 0.2495 0.3505 0.4000 303 H 0.2194 0.2713 0.5093 304 H 0.1502 0.1748 0.6750 305 H 0.0972 0.1280 0.7748 306 H 0.0846 0.0694 0.8460 307 H 0.0589 0.0446 0.8965