# List of top-scoring protein chains for T0449.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2cirA	297	2.61e-23		
1snzA	344	7.14e-21	b.30.5.4	98930
2htaA	309	8.11e-21		
1mmuA	347	9.19e-18	b.30.5.4	79303
1ns7A	347	1.02e-17	b.30.5.4	80707
1ns4A	347	1.10e-17	b.30.5.4	80703
1ns8A	347	1.28e-17	b.30.5.4	80709
1nssA	347	1.86e-17	b.30.5.4	80716
1nsuA	347	4.65e-17	b.30.5.4	80718
1nszA	347	6.54e-17	b.30.5.4	80724
1lurA	339	4.73e-15	b.30.5.4	84717
1z45A	699	2.17e-11	b.30.5.4,c.2.1.2	124427,124428
1ygaA	342	1.05e-10		
1jovA	270	1.98e-10	b.30.5.7	84192
9papA	212	17.68	d.3.1.1	37006
1stfE	212	17.71	d.3.1.1	37012
1b97A	244	20.82	c.52.1.2	33252
1khqA	212	32.14	d.3.1.1	90964
2cioA	212	32.38		
2b5iC	199	35.66	b.1.2.1,b.1.2.1	127898,127899
2erjC	247	42.38	b.1.2.1,b.1.2.1	132292,132293
2fjtA	182	42.68		
1p57B	255	43.37	b.47.1.2	94126
1mcwW	216	43.56	b.1.1.1,b.1.1.2	20602,21509
1ow0A	214	44.26	b.1.1.2,b.1.1.2	87477,87478
2qejA	216	44.49		
2ok8A	316	46.80		
1md8A	329	53.01	b.47.1.2,g.18.1.1	91245,91246
1md7A	328	53.17	b.47.1.2,g.18.1.1	91243,91244
2esgA	475	61.91		
1g55A	343	64.05	c.66.1.26	34247
2ge5A	219	68.23		
1gpzA	399	70.64	b.47.1.2,g.18.1.1,g.18.1.1	70302,70303,70304
1b94A	244	72.33	c.52.1.2	33250
1eonA	245	72.38	c.52.1.2	33238
1b96A	244	75.44	c.52.1.2	33268
2ouoA	130	77.14		
1bssA	244	82.35	c.52.1.2	33256
2zbkA	389	83.26		
1g6pA	66	83.40	b.40.4.5	65168
1sx5A	244	84.11	c.52.1.2	99023
1z8gA	372	87.36	b.47.1.2,d.170.1.2	124697,124698
2dwwA	114	88.85		
1suzA	244	89.95	c.52.1.2	99013