# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2cirA 297 1.87e-33 1mmuA 347 7.34e-33 b.30.5.4 79303 1nszA 347 9.09e-33 b.30.5.4 80724 2htaA 309 1.68e-32 1snzA 344 2.74e-32 b.30.5.4 98930 1lurA 339 1.32e-31 b.30.5.4 84717 1ygaA 342 5.36e-30 1z45A 699 2.66e-29 b.30.5.4,c.2.1.2 124427,124428 1jovA 270 3.71e-26 b.30.5.7 84192 3blcA 330 0.03775 2nwfA 141 3.628 1aac 105 3.984 1orvA 728 5.549 b.70.3.1,c.69.1.24 87354,87355 1jz8A 1023 6.720 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1xfcA 384 6.994 2rk9A 145 9.917 1dp0A 1023 11.70 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22073,22074,23722,24346,28845 1w3oA 216 12.00 b.45.1.1 114142 1rieA 129 12.33 b.33.1.1 24427 1wba 175 14.47 1rcy 151 14.90 2nvgA 141 15.12 1pgsA 314 18.32 b.121.1.1,b.121.1.1 23653,23654 1rfsA 139 20.01 b.33.1.1 24434 1wbaA 175 20.14 b.42.4.1 25591 1i69A 219 22.10 c.94.1.1 61825 2cr9A 139 22.26 d.297.1.1 130735 1npeA 267 23.33 b.68.5.1 92032 1v7wA 807 24.39 a.102.1.4,b.30.5.3 108411,108412 1p4uA 153 27.93 b.1.10.2 87780 2j63A 467 28.70 1bglA 1023 28.99 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22097,22098,23734,24358,28857 2a7bA 120 29.16 b.1.10.2 126333 1tenA 90 29.16 b.1.2.1 21990 1sz6A 249 30.26 d.165.1.1 112171 2i8tA 167 31.77 1f9zA 135 32.32 d.32.1.1 38484 1rrvA 416 32.88 c.87.1.5 105083 1bxaA 105 32.90 b.6.1.1 22839 1al3 324 33.84 1tqzA 133 35.39 b.55.1.11 119327 1k2fA 190 36.58 b.8.1.2 68054 4ubpB 126 36.86 b.85.3.1 28345 1hleA 345 36.91 e.1.1.1 42618 2dtcA 126 38.72 1gyvA 120 38.73 b.1.10.2 70790 1dy9A 187 40.57 b.47.1.3 26400 1uypA 432 41.05 b.29.1.19,b.67.2.3 100176,100177 1bqk 124 41.88 2bibA 547 42.29 b.109.1.1,d.157.1.8 128581,128582 1hbq 183 43.08 1xdyA 298 44.20 d.176.1.1 115186 1sfdA 105 47.24 b.6.1.1 105480 1fa8A 135 48.35 d.32.1.1 38486 2f0xA 148 50.30 d.38.1.5 132673 1a6wL 109 51.07 b.1.1.1 20252 1hd7A 318 53.64 d.151.1.1 41780 1g6gA 127 53.76 b.26.1.2 23916 1bxsA 501 53.96 c.82.1.1 35357 1yewA 382 55.24 2odjA 428 59.21 2gbaA 105 60.09 2eqjA 66 60.35 1adwA 123 63.50 b.6.1.1 22893 1hurA 180 63.67 c.37.1.8 32052 1nbcA 155 64.14 b.2.2.2 22390 1nt0A 286 64.74 b.23.1.1,b.23.1.1,g.3.11.1 86143,86144,86145 1iu1A 146 66.57 b.1.10.2 71428 1ynaA 194 66.62 b.29.1.11 24335 1iuzA 98 67.16 b.6.1.1 22861 2ia7A 134 67.45 1fnhA 271 67.91 b.1.2.1,b.1.2.1,b.1.2.1 21976,21977,21978 1pmiA 440 68.73 b.82.1.3 28114 1lvoA 302 68.74 b.47.1.4 74284 2vgdA 218 69.56 1hkfA 122 71.74 b.1.1.1 83553 1mooA 260 72.57 b.74.1.1 79359 1dqqB 210 73.00 b.1.1.1,b.1.1.2 20421,21391 2q6fA 309 74.41 2r6uA 148 74.86 1dp4A 435 75.52 c.93.1.1 35710 2d4pA 141 79.78 1i6aA 219 80.02 c.94.1.1 61827 1e30A 155 80.09 b.6.1.1 23016 2gu9A 113 80.59 1diwA 441 80.85 b.29.1.6,b.42.4.2 24264,25609 1q67A 231 85.02 b.55.1.7 95960 2asfA 137 85.75 b.45.1.1 127253 1qwdA 177 87.31 b.60.1.1 96471 1gywA 128 87.84 b.1.10.2 70791 2retB 175 88.55 2aacA 177 89.07 b.82.4.1 28150