# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2cirA 297 3.72e-34 2htaA 309 2.01e-33 1mmuA 347 2.90e-33 b.30.5.4 79303 1nszA 347 4.99e-33 b.30.5.4 80724 1snzA 344 7.96e-33 b.30.5.4 98930 1lurA 339 1.60e-32 b.30.5.4 84717 1ygaA 342 8.68e-31 1z45A 699 1.02e-29 b.30.5.4,c.2.1.2 124427,124428 1jovA 270 4.84e-27 b.30.5.7 84192 3blcA 330 0.01134 1jz8A 1023 0.8133 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1xfcA 384 1.265 1dp0A 1023 4.948 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22073,22074,23722,24346,28845 1wba 175 8.462 1orvA 728 9.857 b.70.3.1,c.69.1.24 87354,87355 2i8tA 167 10.32 2rk9A 145 12.90 1yewA 382 13.43 2nwfA 141 13.85 2gu9A 113 13.98 1aac 105 14.81 1tqzA 133 14.82 b.55.1.11 119327 1w3oA 216 16.91 b.45.1.1 114142 1bglA 1023 19.91 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22097,22098,23734,24358,28857 2cr9A 139 22.19 d.297.1.1 130735 1i69A 219 23.29 c.94.1.1 61825 4ubpB 126 23.43 b.85.3.1 28345 2nqcA 138 23.47 1v7wA 807 23.64 a.102.1.4,b.30.5.3 108411,108412 1sz6A 249 23.80 d.165.1.1 112171 2r6uA 148 26.55 1rcy 151 26.72 1iuzA 98 27.65 b.6.1.1 22861 2eqjA 66 28.05 2f0xA 148 29.21 d.38.1.5 132673 1fnhA 271 29.57 b.1.2.1,b.1.2.1,b.1.2.1 21976,21977,21978 1f9zA 135 29.57 d.32.1.1 38484 1bxaA 105 31.07 b.6.1.1 22839 1wbaA 175 34.27 b.42.4.1 25591 3bc9A 599 35.11 1i6aA 219 35.19 c.94.1.1 61827 1fa8A 135 36.57 d.32.1.1 38486 1xdyA 298 36.84 d.176.1.1 115186 2j63A 467 39.02 2dtcA 126 39.22 1rieA 129 39.60 b.33.1.1 24427 2ia7A 134 40.37 2a7bA 120 41.80 b.1.10.2 126333 2z2nA 299 41.81 3bs6A 280 45.30 1dp4A 435 46.72 c.93.1.1 35710 1g6q2 328 49.00 1pmiA 440 49.69 b.82.1.3 28114 1tenA 90 50.89 b.1.2.1 21990 1p4uA 153 51.21 b.1.10.2 87780 2o3hA 285 52.05 1gyvA 120 52.71 b.1.10.2 70790 1al3 324 53.41 1w4tA 299 57.15 d.3.1.5 120639 1bcpC 199 59.20 b.40.2.1,d.169.1.2 25121,42430 1hd7A 318 59.32 d.151.1.1 41780 1ynaA 194 60.37 b.29.1.11 24335 2dy3A 361 60.52 2bibA 547 60.57 b.109.1.1,d.157.1.8 128581,128582 1ejxB 101 61.23 b.85.3.1 83183 1icwA 72 63.37 d.9.1.1 37357 2ac1A 541 63.55 1a6wL 109 64.29 b.1.1.1 20252 1hurA 180 64.37 c.37.1.8 32052 1k2fA 190 65.47 b.8.1.2 68054 2j7nA 1022 66.24 2odjA 428 71.12 1efcA 393 71.67 b.43.3.1,b.44.1.1,c.37.1.8 25680,25720,32113 2retB 175 73.26 1j1tA 233 74.03 b.29.1.18 90771 3cfuA 159 74.27 1fwcB 106 74.71 b.85.3.1 28324 2hp0A 466 75.13 2uwnA 187 75.52 1bqk 124 75.81 1npeA 267 78.65 b.68.5.1 92032 1ubpB 122 79.22 b.85.3.1 28346 1qwdA 177 79.69 b.60.1.1 96471 2nn6E 305 82.22 1y13A 181 83.21 d.96.1.2 116319 1nkgA 508 83.99 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 3cryA 188 86.66 1diwA 441 87.09 b.29.1.6,b.42.4.2 24264,25609 1hkfA 122 88.15 b.1.1.1 83553 1sfdA 105 88.22 b.6.1.1 105480