# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2cirA 297 3.12e-31 1nszA 347 2.95e-30 b.30.5.4 80724 1mmuA 347 7.97e-30 b.30.5.4 79303 1snzA 344 8.63e-30 b.30.5.4 98930 2htaA 309 1.00e-29 1lurA 339 1.62e-29 b.30.5.4 84717 1ygaA 342 7.40e-27 1z45A 699 2.03e-26 b.30.5.4,c.2.1.2 124427,124428 1jovA 270 9.19e-24 b.30.5.7 84192 3blcA 330 0.3391 2i8tA 167 1.873 1aac 105 2.385 1wbaA 175 3.122 b.42.4.1 25591 1wba 175 3.391 2nwfA 141 3.565 1orvA 728 5.656 b.70.3.1,c.69.1.24 87354,87355 2rk9A 145 5.665 1bxaA 105 5.802 b.6.1.1 22839 2nvgA 141 7.157 1w3oA 216 8.659 b.45.1.1 114142 1uypA 432 9.187 b.29.1.19,b.67.2.3 100176,100177 1bqk 124 9.534 1xfcA 384 9.581 1bqkA 124 10.00 b.6.1.1 22889 2bibA 547 11.96 b.109.1.1,d.157.1.8 128581,128582 1sfdA 105 12.12 b.6.1.1 105480 2dtcA 126 12.27 2asfA 137 13.51 b.45.1.1 127253 1rieA 129 14.08 b.33.1.1 24427 1rcy 151 14.09 1iuzA 98 14.71 b.6.1.1 22861 2a7bA 120 16.51 b.1.10.2 126333 1iu1A 146 17.05 b.1.10.2 71428 1tenA 90 18.26 b.1.2.1 21990 2hj1A 97 18.68 1f9zA 135 19.13 d.32.1.1 38484 1pbyB 337 20.09 b.69.2.2 94422 1gyvA 120 20.45 b.1.10.2 70790 1adwA 123 21.76 b.6.1.1 22893 1npeA 267 23.77 b.68.5.1 92032 1fa8A 135 24.27 d.32.1.1 38486 1rrvA 416 24.94 c.87.1.5 105083 1x8mA 288 26.94 b.82.1.13 109516 1id2A 106 27.33 b.6.1.1 62288 2hx5A 152 27.82 d.38.1.1 136837 4ubpB 126 27.89 b.85.3.1 28345 1et7A 341 28.63 b.6.1.3,b.6.1.3 23070,23071 2hbtA 247 29.04 2gbaA 105 29.08 3bs6A 280 29.80 2gu9A 113 30.00 1yewA 382 32.25 1efcA 393 32.38 b.43.3.1,b.44.1.1,c.37.1.8 25680,25720,32113 1qksA 567 33.45 a.3.1.2,b.70.2.1 15951,27710 1gywA 128 33.66 b.1.10.2 70791 3bc9A 599 34.54 2nqcA 138 35.63 1hkfA 122 35.96 b.1.1.1 83553 1k2fA 190 36.53 b.8.1.2 68054 1grwA 126 39.05 b.1.11.2 70391 1ac6A 110 40.06 b.1.1.1 20606 2cr9A 139 40.51 d.297.1.1 130735 2j43A 219 42.16 1i69A 219 42.43 c.94.1.1 61825 2j8gA 339 45.25 2z2nA 299 45.45 1dp4A 435 45.84 c.93.1.1 35710 1diwA 441 46.10 b.29.1.6,b.42.4.2 24264,25609 1pmyA 123 46.32 b.6.1.1 22888 1e88A 160 46.71 g.14.1.2,g.14.1.2,g.27.1.1 44669,44670,44950 1a6wL 109 47.37 b.1.1.1 20252 1fwcB 106 48.35 b.85.3.1 28324 1mooA 260 48.55 b.74.1.1 79359 1eajA 126 49.77 b.1.1.1 59401 1kyaA 499 51.29 b.6.1.3,b.6.1.3,b.6.1.3 73203,73204,73205 1kbvA 327 51.76 b.6.1.3,b.6.1.3 68395,68396 2d40A 354 52.00 1juhA 350 53.45 b.82.1.5 71884 1dlfH 124 53.47 b.1.1.1 20383 1e30A 155 54.31 b.6.1.1 23016 1rwiA 270 55.40 b.68.9.1 97987 1fo0A 116 55.97 b.1.1.1 20610 1wwuA 99 56.79 1ejxB 101 56.96 b.85.3.1 83183 1ynaA 194 57.09 b.29.1.11 24335 1yfnA 118 57.88 b.136.1.1 123080 1bxvA 91 58.04 b.6.1.1 22875 2j7nA 1022 58.34 1r5tA 142 59.57 c.97.1.1 104812 1tqzA 133 60.83 b.55.1.11 119327 1xpiA 231 61.84 1jidA 128 62.61 d.201.1.1 66735 1a2yA 107 62.71 b.1.1.1 19926 1a6uL 108 63.25 b.1.1.1 20254 1h5bA 113 63.39 b.1.1.1 60638 1sz6A 249 63.83 d.165.1.1 112171 1fnaA 91 64.15 b.1.2.1 21971 1g7jA 107 64.25 b.1.1.1 19932 1qxrA 189 66.91 b.82.1.7 96552 1k5nB 100 68.29 b.1.1.2 77268 1i3uA 127 68.67 b.1.1.1 61636 2odjA 428 68.93 1qlpA 394 69.91 e.1.1.1 42628 2ivfC 214 69.95 1as4A 341 69.97 e.1.1.1 42623 1g3gA 164 70.70 b.26.1.2 23918 2ac1A 541 70.75 1p4uA 153 70.89 b.1.10.2 87780 2atpB 115 71.04 1hs6A 611 71.86 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1plc 99 72.68 1hd7A 318 72.73 d.151.1.1 41780 2h14A 317 74.62 1nbcA 155 77.77 b.2.2.2 22390 1sq2N 113 78.23 b.1.1.1 105881 2i24N 121 78.52 1xdyA 298 79.43 d.176.1.1 115186 1ubpB 122 80.11 b.85.3.1 28346 2retB 175 81.24 3b5lB 198 81.28 1icwA 72 81.31 d.9.1.1 37357 2q9oA 559 82.84 1ox8A 107 82.85 b.136.1.1 93671 1kcvH 217 82.94 b.1.1.1,b.1.1.2 72315,72316 2fnbA 95 83.25 b.1.2.1 21979 2gopA 347 83.66 1xl4A 301 85.07 b.1.18.16,f.14.1.1 115430,115431 2q6fA 309 85.15 1t3qC 288 86.78 d.87.2.1,d.145.1.3 106371,106372 1a14L 104 87.35 b.1.1.1 20060 1a6vL 110 87.36 b.1.1.1 20256 1r0vA 305 88.26 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1tvdA 116 89.65 b.1.1.1 20650