# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2cirA	297	2.29e-33		
2htaA	309	3.02e-32		
1snzA	344	5.34e-32	b.30.5.4	98930
1nszA	347	6.26e-32	b.30.5.4	80724
1mmuA	347	1.58e-31	b.30.5.4	79303
1lurA	339	3.79e-31	b.30.5.4	84717
1ygaA	342	1.11e-29		
1z45A	699	1.01e-28	b.30.5.4,c.2.1.2	124427,124428
1jovA	270	1.37e-25	b.30.5.7	84192
3blcA	330	0.3268		
1wba	175	3.174		
2rk9A	145	3.384		
2nwfA	141	4.451		
1xfcA	384	6.103		
2i8tA	167	7.792		
2nvgA	141	8.677		
1rrvA	416	10.07	c.87.1.5	105083
1wbaA	175	10.28	b.42.4.1	25591
1rcy	151	12.79		
1sz6A	249	12.92	d.165.1.1	112171
1w3oA	216	13.03	b.45.1.1	114142
2j63A	467	14.07		
1rieA	129	15.98	b.33.1.1	24427
1aac	105	16.87		
1orvA	728	19.23	b.70.3.1,c.69.1.24	87354,87355
2bibA	547	22.45	b.109.1.1,d.157.1.8	128581,128582
1tqzA	133	24.84	b.55.1.11	119327
2gu9A	113	25.20		
1bqk	124	25.42		
1mooA	260	26.58	b.74.1.1	79359
1qxrA	189	26.93	b.82.1.7	96552
1xdyA	298	28.25	d.176.1.1	115186
1yewA	382	28.71		
1v7wA	807	31.52	a.102.1.4,b.30.5.3	108411,108412
2hx5A	152	33.29	d.38.1.1	136837
2j8gA	339	33.76		
2z2nA	299	35.75		
1f9zA	135	35.89	d.32.1.1	38484
1i69A	219	36.77	c.94.1.1	61825
2cr9A	139	40.58	d.297.1.1	130735
1npeA	267	41.03	b.68.5.1	92032
2a7bA	120	41.05	b.1.10.2	126333
1fa8A	135	41.65	d.32.1.1	38486
2bwrA	401	42.73		
2hbtA	247	43.87		
1i6aA	219	44.07	c.94.1.1	61827
1tenA	90	44.83	b.1.2.1	21990
2ac1A	541	46.64		
2asfA	137	47.46	b.45.1.1	127253
1rfsA	139	47.63	b.33.1.1	24434
2j7nA	1022	50.07		
1hleA	345	51.23	e.1.1.1	42618
1hurA	180	51.93	c.37.1.8	32052
1qlpA	394	52.46	e.1.1.1	42628
1p4uA	153	53.05	b.1.10.2	87780
1pgsA	314	53.65	b.121.1.1,b.121.1.1	23653,23654
2dtcA	126	53.87		
1ynaA	194	56.53	b.29.1.11	24335
1fnhA	271	56.87	b.1.2.1,b.1.2.1,b.1.2.1	21976,21977,21978
1qwdA	177	57.19	b.60.1.1	96471
1adwA	123	58.13	b.6.1.1	22893
1k2fA	190	58.41	b.8.1.2	68054
1iu1A	146	59.62	b.1.10.2	71428
1diwA	441	61.66	b.29.1.6,b.42.4.2	24264,25609
2nqcA	138	62.52		
1cv2A	296	62.59	c.69.1.8	34680
1icwA	72	69.83	d.9.1.1	37357
1e30A	155	73.86	b.6.1.1	23016
1bxaA	105	74.56	b.6.1.1	22839
1al3	324	75.30		
1gyvA	120	76.20	b.1.10.2	70790
2eqjA	66	78.32		
1uypA	432	82.60	b.29.1.19,b.67.2.3	100176,100177
2gc7A	386	84.07	b.69.2.1	134954
1gw5S	142	86.00	d.110.4.2	70633
1dy9A	187	86.32	b.47.1.3	26400
1x8mA	288	89.33	b.82.1.13	109516
2o3hA	285	89.99