# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2cirA	297	8.85e-34		
2htaA	309	1.10e-32		
1nszA	347	3.92e-32	b.30.5.4	80724
1snzA	344	5.66e-32	b.30.5.4	98930
1mmuA	347	8.52e-32	b.30.5.4	79303
1lurA	339	2.44e-31	b.30.5.4	84717
1ygaA	342	1.03e-29		
1z45A	699	9.99e-29	b.30.5.4,c.2.1.2	124427,124428
1jovA	270	4.60e-26	b.30.5.7	84192
3blcA	330	0.1548		
1xfcA	384	1.962		
2nwfA	141	2.935		
1rrvA	416	5.172	c.87.1.5	105083
2j63A	467	5.409		
1wba	175	6.214		
2nvgA	141	7.414		
2rk9A	145	8.349		
1v7wA	807	10.02	a.102.1.4,b.30.5.3	108411,108412
1rieA	129	10.50	b.33.1.1	24427
1rcy	151	11.79		
2i8tA	167	11.85		
1w3oA	216	12.20	b.45.1.1	114142
1aac	105	13.17		
1orvA	728	13.30	b.70.3.1,c.69.1.24	87354,87355
2gu9A	113	17.12		
1wbaA	175	17.38	b.42.4.1	25591
1sz6A	249	17.95	d.165.1.1	112171
1qxrA	189	18.20	b.82.1.7	96552
1xdyA	298	18.73	d.176.1.1	115186
1tqzA	133	21.29	b.55.1.11	119327
1uypA	432	26.08	b.29.1.19,b.67.2.3	100176,100177
2cr9A	139	26.42	d.297.1.1	130735
1pgsA	314	28.91	b.121.1.1,b.121.1.1	23653,23654
1i6aA	219	28.98	c.94.1.1	61827
1i69A	219	29.83	c.94.1.1	61825
1k2fA	190	31.45	b.8.1.2	68054
1rfsA	139	32.53	b.33.1.1	24434
1hs6A	611	34.60	a.118.1.7,b.98.1.1,d.92.1.13	61233,61234,61235
1pmiA	440	35.81	b.82.1.3	28114
2hbtA	247	36.87		
1yewA	382	37.72		
2hx5A	152	37.75	d.38.1.1	136837
1al3	324	40.22		
2j8gA	339	40.40		
1bqk	124	43.52		
1qlpA	394	44.34	e.1.1.1	42628
2dtcA	126	46.00		
1bxaA	105	47.21	b.6.1.1	22839
1npeA	267	52.93	b.68.5.1	92032
1ynaA	194	53.44	b.29.1.11	24335
2asfA	137	55.01	b.45.1.1	127253
2gp5A	349	55.82		
2eqjA	66	55.93		
2nqcA	138	56.49		
1qwdA	177	59.12	b.60.1.1	96471
2bibA	547	60.59	b.109.1.1,d.157.1.8	128581,128582
1cv2A	296	61.58	c.69.1.8	34680
1hbq	183	61.59		
1j1tA	233	61.67	b.29.1.18	90771
1tenA	90	62.63	b.1.2.1	21990
2o3hA	285	63.07		
1icwA	72	65.57	d.9.1.1	37357
4ubpB	126	65.74	b.85.3.1	28345
1jz8A	1023	66.86	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	67830,67831,67832,67833,67834
1dy9A	187	69.90	b.47.1.3	26400
2citA	282	71.89	c.1.8.3	130499
2p5bA	352	75.42		
1e30A	155	75.92	b.6.1.1	23016
1f9zA	135	76.01	d.32.1.1	38484
2a6zA	222	77.12	b.29.1.13	126319
2hp0A	466	77.21		
1x8mA	288	77.79	b.82.1.13	109516
2a7bA	120	78.10	b.1.10.2	126333
1iu1A	146	80.65	b.1.10.2	71428
1p4uA	153	82.10	b.1.10.2	87780
1diwA	441	86.81	b.29.1.6,b.42.4.2	24264,25609
1aqb	183	87.19		
1vcbA	118	88.24	d.15.1.1	37603