# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2cirA	297	2.23e-33		
2htaA	309	2.56e-32		
1nszA	347	7.40e-32	b.30.5.4	80724
1snzA	344	1.04e-31	b.30.5.4	98930
1mmuA	347	1.48e-31	b.30.5.4	79303
1lurA	339	6.01e-31	b.30.5.4	84717
1ygaA	342	1.99e-29		
1z45A	699	1.91e-28	b.30.5.4,c.2.1.2	124427,124428
1jovA	270	6.80e-26	b.30.5.7	84192
3blcA	330	0.3136		
2nwfA	141	2.778		
1xfcA	384	3.175		
1rrvA	416	5.835	c.87.1.5	105083
2j63A	467	6.386		
2nvgA	141	6.427		
1wba	175	7.514		
2rk9A	145	7.901		
1rcy	151	9.711		
1rieA	129	9.817	b.33.1.1	24427
1w3oA	216	10.06	b.45.1.1	114142
1aac	105	10.20		
1orvA	728	10.21	b.70.3.1,c.69.1.24	87354,87355
2i8tA	167	11.99		
1v7wA	807	13.02	a.102.1.4,b.30.5.3	108411,108412
2gu9A	113	15.04		
1wbaA	175	15.29	b.42.4.1	25591
1qxrA	189	21.58	b.82.1.7	96552
1sz6A	249	21.68	d.165.1.1	112171
1xdyA	298	22.43	d.176.1.1	115186
1i69A	219	23.27	c.94.1.1	61825
1tqzA	133	24.11	b.55.1.11	119327
1pgsA	314	27.02	b.121.1.1,b.121.1.1	23653,23654
1uypA	432	27.16	b.29.1.19,b.67.2.3	100176,100177
1i6aA	219	27.58	c.94.1.1	61827
2cr9A	139	30.31	d.297.1.1	130735
1al3	324	30.49		
1k2fA	190	33.53	b.8.1.2	68054
2asfA	137	36.46	b.45.1.1	127253
1rfsA	139	37.11	b.33.1.1	24434
1yewA	382	39.00		
1bqk	124	43.20		
1bxaA	105	44.40	b.6.1.1	22839
2hx5A	152	45.31	d.38.1.1	136837
1qlpA	394	45.60	e.1.1.1	42628
1tenA	90	46.19	b.1.2.1	21990
1npeA	267	47.66	b.68.5.1	92032
1qwdA	177	49.84	b.60.1.1	96471
2dtcA	126	53.91		
2nqcA	138	54.20		
1hbq	183	54.28		
1f9zA	135	55.57	d.32.1.1	38484
2a7bA	120	57.10	b.1.10.2	126333
1p4uA	153	58.06	b.1.10.2	87780
2citA	282	58.42	c.1.8.3	130499
2j8gA	339	60.54		
2hbtA	247	61.31		
2eqjA	66	61.46		
1e30A	155	62.94	b.6.1.1	23016
1iu1A	146	65.20	b.1.10.2	71428
1efcA	393	65.82	b.43.3.1,b.44.1.1,c.37.1.8	25680,25720,32113
1ynaA	194	66.25	b.29.1.11	24335
1pmiA	440	66.56	b.82.1.3	28114
2o3hA	285	67.87		
1dy9A	187	68.47	b.47.1.3	26400
4ubpB	126	68.66	b.85.3.1	28345
1icwA	72	69.17	d.9.1.1	37357
2a6zA	222	70.05	b.29.1.13	126319
1hs6A	611	70.32	a.118.1.7,b.98.1.1,d.92.1.13	61233,61234,61235
2oizA	361	78.31		
2ac1A	541	79.81		
1yfnA	118	80.95	b.136.1.1	123080
1g6gA	127	81.56	b.26.1.2	23916
1fa8A	135	82.07	d.32.1.1	38486
1j1tA	233	84.82	b.29.1.18	90771
1vcbA	118	86.64	d.15.1.1	37603
2p90A	319	89.60