# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2cirA 297 4.38e-33 1nszA 347 1.90e-31 b.30.5.4 80724 2htaA 309 2.01e-31 1snzA 344 3.03e-31 b.30.5.4 98930 1mmuA 347 4.36e-31 b.30.5.4 79303 1lurA 339 5.46e-31 b.30.5.4 84717 1ygaA 342 4.70e-29 1z45A 699 4.09e-28 b.30.5.4,c.2.1.2 124427,124428 1jovA 270 8.98e-25 b.30.5.7 84192 3blcA 330 0.4768 2nwfA 141 1.287 2i8tA 167 2.477 1xfcA 384 2.481 2nvgA 141 3.051 2rk9A 145 3.737 1wba 175 3.745 1orvA 728 4.346 b.70.3.1,c.69.1.24 87354,87355 1sz6A 249 5.768 d.165.1.1 112171 1wbaA 175 5.772 b.42.4.1 25591 1rieA 129 10.61 b.33.1.1 24427 1uypA 432 13.03 b.29.1.19,b.67.2.3 100176,100177 1aac 105 13.50 1qksA 567 16.11 a.3.1.2,b.70.2.1 15951,27710 1f9zA 135 16.23 d.32.1.1 38484 1mooA 260 16.27 b.74.1.1 79359 1fa8A 135 18.66 d.32.1.1 38486 1w3oA 216 20.91 b.45.1.1 114142 1diwA 441 21.15 b.29.1.6,b.42.4.2 24264,25609 1qwdA 177 21.84 b.60.1.1 96471 2eqjA 66 22.83 1rrvA 416 25.17 c.87.1.5 105083 2z2nA 299 25.22 1bqk 124 27.12 2hbtA 247 27.58 1rcy 151 28.09 1bglA 1023 29.24 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22097,22098,23734,24358,28857 2cr9A 139 31.46 d.297.1.1 130735 1tqzA 133 31.71 b.55.1.11 119327 1k2fA 190 34.02 b.8.1.2 68054 1qlpA 394 35.23 e.1.1.1 42628 1hbq 183 36.01 1hleA 345 38.22 e.1.1.1 42618 2a7bA 120 38.29 b.1.10.2 126333 2j7nA 1022 41.50 1dp4A 435 41.89 c.93.1.1 35710 2f0xA 148 43.09 d.38.1.5 132673 2ac1A 541 46.57 1ynaA 194 46.84 b.29.1.11 24335 1tenA 90 48.02 b.1.2.1 21990 1epwA 1290 48.21 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2j63A 467 49.22 2bibA 547 49.37 b.109.1.1,d.157.1.8 128581,128582 1npeA 267 49.92 b.68.5.1 92032 1aqb 183 50.60 1yewA 382 51.30 2hx5A 152 51.72 d.38.1.1 136837 2r0cA 549 53.16 2gopA 347 56.21 2j8gA 339 59.44 2dtcA 126 59.60 1jz8A 1023 59.73 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 3bwuC 205 60.25 1jmxB 349 61.46 b.69.2.2 66906 1gyvA 120 64.16 b.1.10.2 70790 1rfsA 139 65.07 b.33.1.1 24434 3c99A 432 66.80 1v7wA 807 68.04 a.102.1.4,b.30.5.3 108411,108412 2c21A 144 68.31 d.32.1.1 129649 2d4pA 141 69.03 1i69A 219 69.36 c.94.1.1 61825 3b5lB 198 71.79 2a8kA 108 71.99 d.243.1.2 126404 1adwA 123 72.24 b.6.1.1 22893 1iu1A 146 72.55 b.1.10.2 71428 2p90A 319 76.63 2vgdA 218 76.78 1p4uA 153 81.09 b.1.10.2 87780 1hurA 180 81.28 c.37.1.8 32052 1ew4A 106 81.47 d.82.2.1 40023 1g6gA 127 82.15 b.26.1.2 23916 2bwrA 401 83.48 2p4oA 306 84.03 1a6wL 109 84.32 b.1.1.1 20252 2asfA 137 88.20 b.45.1.1 127253