# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2cirA 297 6.32e-29 2htaA 309 3.06e-27 1snzA 344 3.37e-27 b.30.5.4 98930 1lurA 339 4.84e-27 b.30.5.4 84717 1mmuA 347 6.20e-27 b.30.5.4 79303 1nszA 347 1.65e-25 b.30.5.4 80724 1ygaA 342 2.48e-24 1z45A 699 2.68e-23 b.30.5.4,c.2.1.2 124427,124428 1jovA 270 3.36e-22 b.30.5.7 84192 1orvA 728 0.3721 b.70.3.1,c.69.1.24 87354,87355 3blcA 330 0.4134 2hf0A 316 1.605 1wba 175 2.427 3bs6A 280 2.985 2i8tA 167 4.539 2nwfA 141 5.043 1eybA 471 5.666 b.82.1.4 28115 1wbaA 175 6.374 b.42.4.1 25591 1fnhA 271 6.584 b.1.2.1,b.1.2.1,b.1.2.1 21976,21977,21978 1f1xA 322 6.705 d.32.1.3,d.32.1.3 83208,83209 1rfsA 139 7.274 b.33.1.1 24434 1d2pA 373 7.806 b.3.5.1,b.3.5.1,b.3.5.1,b.3.5.1 22629,22630,22631,22632 1kmoA 774 8.864 f.4.3.3 72753 1kit 757 9.384 2nvgA 141 10.59 2oqeA 660 10.89 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 2qt6A 498 12.04 1o6gA 710 12.69 b.69.7.1,c.69.1.4 81087,81088 1j1tA 233 13.53 b.29.1.18 90771 1yewA 382 14.00 3c99A 432 14.34 1ki0A 253 15.05 g.14.1.1,g.14.1.1,g.14.1.1 72493,72494,72495 2p3yA 491 15.30 2ac1A 541 15.58 2q4aA 330 16.02 b.82.2.8 139839 1lf6A 684 16.61 a.102.1.5,b.30.5.5 77918,77919 1jz8A 1023 17.98 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1htyA 1015 18.79 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1y0yA 353 19.04 b.49.3.1,c.56.5.4 122514,122515 2i4lA 458 20.20 1tyjA 170 20.24 b.2.2.2 119390 2jfkA 433 20.74 1m7sA 484 21.21 e.5.1.1 74574 1nt0A 286 21.48 b.23.1.1,b.23.1.1,g.3.11.1 86143,86144,86145 1umkA 275 21.64 b.43.4.2,c.25.1.1 113312,113313 2pvaA 345 22.39 d.153.1.3 41850 1jofA 365 22.62 b.69.10.1 71775 2gj2A 85 23.23 1qx4A 274 23.47 b.43.4.2,c.25.1.1 104624,104625 2oizA 361 24.67 1yloA 348 25.23 b.49.3.1,c.56.5.4 123659,123660 2uurA 245 25.30 1bmlC 362 25.75 d.15.5.1,d.15.5.1,d.15.5.1 37729,37730,37731 1a65A 504 25.95 b.6.1.3,b.6.1.3,b.6.1.3 23148,23149,23150 2rk9A 145 27.88 1nexB 464 28.78 a.158.1.1,b.69.4.1 80443,80444 3cbwA 353 29.31 2j43A 219 29.44 2d73A 738 29.72 1ms9A 648 31.21 b.29.1.15,b.68.1.1 85088,85089 1aac 105 33.34 1vluA 468 36.83 c.82.1.1 108864 1d3cA 686 37.17 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 3c3dA 311 40.81 2ghsA 326 41.83 b.68.6.1 135209 2pgnA 589 42.76 1crkA 380 43.98 a.83.1.1,d.128.1.2 18458,41193 1a8d 452 44.36 1owqA 361 46.93 c.1.8.5,d.26.3.1 104041,104042 1k2fA 190 47.26 b.8.1.2 68054 1rrvA 416 47.77 c.87.1.5 105083 2fphX 165 47.93 2odjA 428 47.98 2j63A 467 48.96 1rcy 151 53.96 2gbaA 105 55.45 2pe3A 354 55.86 1qqp1 213 56.31 1h9hE 223 56.71 b.47.1.2 103810 1upsA 420 58.73 b.29.1.2,b.42.2.3 113394,113395 2uzxB 727 59.48 1w3oA 216 59.95 b.45.1.1 114142 1qksA 567 61.93 a.3.1.2,b.70.2.1 15951,27710 1wl4A 397 62.53 1tqzA 133 62.54 b.55.1.11 119327 3bh1A 507 63.54 1x8mA 288 63.80 b.82.1.13 109516 1miqA 375 68.76 b.50.1.2 79151 2eqjA 66 68.76 1bhe 376 71.29 1p80A 753 71.70 c.23.16.3,e.5.1.1 94337,94338 1x0cA 549 72.58 1o20A 427 72.60 c.82.1.1 86556 2aaa 484 72.89 1xkwA 665 75.26 1fnf 368 75.55 2cr9A 139 75.83 d.297.1.1 130735 1i69A 219 76.34 c.94.1.1 61825 1xdyA 298 77.70 d.176.1.1 115186 1aqb 183 77.83 1pgsA 314 77.94 b.121.1.1,b.121.1.1 23653,23654 1zjkA 403 78.05 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 1bqk 124 79.47 1diwA 441 79.83 b.29.1.6,b.42.4.2 24264,25609 1sz6B 263 80.35 b.42.2.1,b.42.2.1 112172,112173 1xksA 450 81.89 b.69.14.1 115422 1o7nA 449 82.53 b.33.1.2,d.129.3.3 81162,81163 1asyA 490 83.48 b.40.4.1,d.104.1.1 25242,40763 1y4wA 518 86.81 b.29.1.19,b.67.2.3 116470,116471 1eylA 186 86.87 b.42.4.1 25593 1yifA 533 87.60 b.29.1.23,b.67.2.1 123283,123284 1yr2A 741 87.68 1qwdA 177 87.82 b.60.1.1 96471 1hl9A 449 88.69 b.71.1.3,c.1.8.11 90650,90651