# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2cirA 297 1.78e-34 2htaA 309 3.69e-33 1nszA 347 1.41e-32 b.30.5.4 80724 1snzA 344 1.86e-32 b.30.5.4 98930 1mmuA 347 2.79e-32 b.30.5.4 79303 1lurA 339 5.08e-32 b.30.5.4 84717 1ygaA 342 5.43e-30 1z45A 699 4.24e-29 b.30.5.4,c.2.1.2 124427,124428 1jovA 270 1.37e-26 b.30.5.7 84192 3blcA 330 0.1680 2nwfA 141 1.064 1xfcA 384 1.874 2nvgA 141 2.978 1uypA 432 3.448 b.29.1.19,b.67.2.3 100176,100177 1wba 175 3.614 2i8tA 167 4.432 2rk9A 145 5.961 1rieA 129 6.647 b.33.1.1 24427 1rrvA 416 8.209 c.87.1.5 105083 1sz6A 249 10.02 d.165.1.1 112171 1wbaA 175 10.07 b.42.4.1 25591 1aac 105 11.30 1f9zA 135 18.53 d.32.1.1 38484 1w3oA 216 19.32 b.45.1.1 114142 1tqzA 133 19.41 b.55.1.11 119327 1rcy 151 20.31 2cr9A 139 21.28 d.297.1.1 130735 1i69A 219 25.36 c.94.1.1 61825 2j63A 467 26.52 1al3 324 26.89 2eqjA 66 27.07 1k2fA 190 27.44 b.8.1.2 68054 1fa8A 135 28.27 d.32.1.1 38486 2j8gA 339 30.41 1bqk 124 31.72 1tenA 90 34.97 b.1.2.1 21990 1rfsA 139 36.78 b.33.1.1 24434 2a7bA 120 37.73 b.1.10.2 126333 1i6aA 219 37.75 c.94.1.1 61827 1hbq 183 38.54 1hs6A 611 39.16 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 2hbtA 247 39.23 1orvA 728 39.54 b.70.3.1,c.69.1.24 87354,87355 1jz8A 1023 40.16 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 2asfA 137 40.33 b.45.1.1 127253 4ubpB 126 40.82 b.85.3.1 28345 1qwdA 177 41.97 b.60.1.1 96471 2dtcA 126 45.71 1w2tA 432 46.30 b.29.1.19,b.67.2.3 120607,120608 2p90A 319 46.55 1npeA 267 46.99 b.68.5.1 92032 1pgsA 314 49.81 b.121.1.1,b.121.1.1 23653,23654 1v7wA 807 50.36 a.102.1.4,b.30.5.3 108411,108412 2hx5A 152 51.98 d.38.1.1 136837 1qksA 567 54.22 a.3.1.2,b.70.2.1 15951,27710 1aqb 183 54.58 1dy9A 187 56.07 b.47.1.3 26400 1gyvA 120 58.79 b.1.10.2 70790 1xdyA 298 59.36 d.176.1.1 115186 1iu1A 146 62.29 b.1.10.2 71428 1epwA 1290 62.85 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1bglA 1023 63.20 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22097,22098,23734,24358,28857 1p4uA 153 64.83 b.1.10.2 87780 1ynaA 194 65.63 b.29.1.11 24335 1diwA 441 65.94 b.29.1.6,b.42.4.2 24264,25609 1efcA 393 66.00 b.43.3.1,b.44.1.1,c.37.1.8 25680,25720,32113 2odjA 428 67.09 1bxaA 105 68.15 b.6.1.1 22839 1dp4A 435 69.69 c.93.1.1 35710 3c99A 432 70.91 1mooA 260 72.35 b.74.1.1 79359 1icwA 72 77.48 d.9.1.1 37357 1o13A 136 78.29 c.55.5.1 80762 2a6zA 222 85.33 b.29.1.13 126319 2citA 282 86.09 c.1.8.3 130499 1lvmA 229 87.58 b.47.1.3 78243