# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2cirA	297	2.80e-34		
2htaA	309	2.30e-33		
1nszA	347	1.03e-32	b.30.5.4	80724
1snzA	344	1.78e-32	b.30.5.4	98930
1mmuA	347	1.98e-32	b.30.5.4	79303
1lurA	339	5.93e-32	b.30.5.4	84717
1ygaA	342	3.73e-30		
1z45A	699	1.90e-29	b.30.5.4,c.2.1.2	124427,124428
1jovA	270	1.62e-26	b.30.5.7	84192
3blcA	330	0.2274		
1xfcA	384	3.468		
2nwfA	141	3.905		
1rrvA	416	4.067	c.87.1.5	105083
2j63A	467	5.966		
1al3	324	6.430		
1wba	175	8.124		
2i8tA	167	9.617		
2rk9A	145	10.47		
2nvgA	141	12.61		
1orvA	728	12.69	b.70.3.1,c.69.1.24	87354,87355
1rcy	151	13.36		
1rieA	129	14.09	b.33.1.1	24427
1w3oA	216	15.71	b.45.1.1	114142
1v7wA	807	19.14	a.102.1.4,b.30.5.3	108411,108412
2cr9A	139	19.53	d.297.1.1	130735
1sz6A	249	24.71	d.165.1.1	112171
1aac	105	25.36		
1pgsA	314	25.56	b.121.1.1,b.121.1.1	23653,23654
1xdyA	298	26.23	d.176.1.1	115186
1i69A	219	28.42	c.94.1.1	61825
1x8mA	288	28.54	b.82.1.13	109516
1tqzA	133	34.77	b.55.1.11	119327
2gu9A	113	34.85		
2citA	282	39.91	c.1.8.3	130499
1qxrA	189	40.47	b.82.1.7	96552
1f9zA	135	42.50	d.32.1.1	38484
4ubpB	126	43.60	b.85.3.1	28345
1uypA	432	46.73	b.29.1.19,b.67.2.3	100176,100177
1k2fA	190	48.57	b.8.1.2	68054
2asfA	137	49.00	b.45.1.1	127253
1wbaA	175	49.51	b.42.4.1	25591
1hs6A	611	51.82	a.118.1.7,b.98.1.1,d.92.1.13	61233,61234,61235
2hbtA	247	52.67		
1rfsA	139	53.29	b.33.1.1	24434
3cx5C	385	56.20		
2eqjA	66	56.58		
1i6aA	219	56.63	c.94.1.1	61827
1fnhA	271	56.84	b.1.2.1,b.1.2.1,b.1.2.1	21976,21977,21978
1fa8A	135	60.67	d.32.1.1	38486
2pjuA	225	62.72		
1tenA	90	65.31	b.1.2.1	21990
2dtcA	126	66.83		
2j8gA	339	66.91		
1pmiA	440	68.82	b.82.1.3	28114
2nqcA	138	68.98		
1npeA	267	69.00	b.68.5.1	92032
1vcbA	118	74.31	d.15.1.1	37603
2hx5A	152	77.36	d.38.1.1	136837
1aqb	183	80.83		
1bqk	124	81.65		
1yewA	382	81.67		
2gp5A	349	84.48		
1iuzA	98	84.69	b.6.1.1	22861
2hp0A	466	84.79		
1e30A	155	85.33	b.6.1.1	23016
2qt6A	498	86.82		
1qlpA	394	87.24	e.1.1.1	42628
1ynaA	194	87.38	b.29.1.11	24335
2j7nA	1022	87.74		
1hbq	183	88.85