# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2cirA	297	3.48e-34		
2htaA	309	5.50e-33		
1nszA	347	1.24e-32	b.30.5.4	80724
1mmuA	347	4.28e-32	b.30.5.4	79303
1snzA	344	4.36e-32	b.30.5.4	98930
1lurA	339	1.02e-31	b.30.5.4	84717
1ygaA	342	1.53e-29		
1z45A	699	6.57e-29	b.30.5.4,c.2.1.2	124427,124428
1jovA	270	2.13e-26	b.30.5.7	84192
1xfcA	384	1.668		
3blcA	330	1.694		
2i8tA	167	1.911		
2nwfA	141	2.771		
1wba	175	3.432		
1rrvA	416	4.358	c.87.1.5	105083
2nvgA	141	4.499		
2rk9A	145	4.983		
1w3oA	216	9.251	b.45.1.1	114142
1wbaA	175	9.900	b.42.4.1	25591
1aac	105	11.49		
1rieA	129	12.89	b.33.1.1	24427
1uypA	432	13.28	b.29.1.19,b.67.2.3	100176,100177
1i69A	219	14.68	c.94.1.1	61825
2j8gA	339	17.37		
2gu9A	113	23.59		
1xdyA	298	24.39	d.176.1.1	115186
2dtcA	126	26.44		
1sz6A	249	27.33	d.165.1.1	112171
2j63A	467	28.16		
1orvA	728	28.40	b.70.3.1,c.69.1.24	87354,87355
2bibA	547	28.70	b.109.1.1,d.157.1.8	128581,128582
1bqk	124	29.25		
1al3	324	30.05		
1rcy	151	30.53		
1iuzA	98	31.68	b.6.1.1	22861
2asfA	137	33.87	b.45.1.1	127253
2hx5A	152	36.95	d.38.1.1	136837
1tenA	90	38.27	b.1.2.1	21990
1pgsA	314	38.28	b.121.1.1,b.121.1.1	23653,23654
1yewA	382	38.32		
2a7bA	120	44.53	b.1.10.2	126333
1qksA	567	45.46	a.3.1.2,b.70.2.1	15951,27710
1adwA	123	46.33	b.6.1.1	22893
1f9zA	135	47.29	d.32.1.1	38484
1ppjC	379	48.88	f.32.1.1,f.21.1.2	104256,104257
3cx5C	385	51.41		
1rfsA	139	51.68	b.33.1.1	24434
1iu1A	146	52.84	b.1.10.2	71428
2ac1A	541	53.55		
2citA	282	55.88	c.1.8.3	130499
4ubpB	126	57.38	b.85.3.1	28345
1hkfA	122	58.28	b.1.1.1	83553
1p4uA	153	58.52	b.1.10.2	87780
1fa8A	135	58.86	d.32.1.1	38486
2cr9A	139	59.49	d.297.1.1	130735
1vcbA	118	60.94	d.15.1.1	37603
1bxaA	105	61.60	b.6.1.1	22839
2hbtA	247	61.93		
1mooA	260	62.59	b.74.1.1	79359
2hj1A	97	64.34		
1gyvA	120	69.00	b.1.10.2	70790
1qwdA	177	70.80	b.60.1.1	96471
1cv2A	296	72.85	c.69.1.8	34680
2nqcA	138	73.05		
1ynaA	194	73.57	b.29.1.11	24335
1shaA	104	77.46	d.93.1.1	40424
2pjuA	225	78.89		
2f0xA	148	79.67	d.38.1.5	132673
2d40A	354	80.81		
1k2fA	190	81.02	b.8.1.2	68054
1icwA	72	83.00	d.9.1.1	37357
1kcvH	217	86.03	b.1.1.1,b.1.1.2	72315,72316
1xpiA	231	87.88		
2abyA	146	89.43		
2psbA	320	89.71		
1ki0A	253	89.84	g.14.1.1,g.14.1.1,g.14.1.1	72493,72494,72495