# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2cirA	297	1.54e-33		
2htaA	309	8.05e-33		
1nszA	347	4.10e-32	b.30.5.4	80724
1snzA	344	9.26e-32	b.30.5.4	98930
1mmuA	347	1.12e-31	b.30.5.4	79303
1lurA	339	2.84e-31	b.30.5.4	84717
1ygaA	342	5.18e-29		
1z45A	699	1.76e-28	b.30.5.4,c.2.1.2	124427,124428
1jovA	270	7.93e-26	b.30.5.7	84192
3blcA	330	0.6229		
1xfcA	384	2.973		
2nwfA	141	4.095		
1wba	175	5.722		
2j63A	467	6.106		
1rrvA	416	6.523	c.87.1.5	105083
2rk9A	145	10.08		
2i8tA	167	10.15		
1aac	105	10.73		
2nvgA	141	10.89		
1al3	324	12.53		
1wbaA	175	13.93	b.42.4.1	25591
1rieA	129	18.31	b.33.1.1	24427
1i69A	219	19.29	c.94.1.1	61825
2bibA	547	19.46	b.109.1.1,d.157.1.8	128581,128582
2asfA	137	21.79	b.45.1.1	127253
1w3oA	216	22.06	b.45.1.1	114142
2cr9A	139	22.59	d.297.1.1	130735
1rcy	151	28.55		
2hx5A	152	28.76	d.38.1.1	136837
1orvA	728	29.20	b.70.3.1,c.69.1.24	87354,87355
2gu9A	113	29.84		
1xdyA	298	32.32	d.176.1.1	115186
1rfsA	139	32.86	b.33.1.1	24434
1uypA	432	32.98	b.29.1.19,b.67.2.3	100176,100177
1aqb	183	35.05		
1bqk	124	35.33		
1bxaA	105	35.64	b.6.1.1	22839
2nqcA	138	36.10		
3cx5C	385	36.53		
1qxrA	189	38.00	b.82.1.7	96552
1sz6A	249	40.69	d.165.1.1	112171
4ubpB	126	42.29	b.85.3.1	28345
2citA	282	43.26	c.1.8.3	130499
1f9zA	135	43.96	d.32.1.1	38484
1yewA	382	45.67		
1tqzA	133	46.08	b.55.1.11	119327
1hbq	183	46.60		
2ac1A	541	47.35		
2j8gA	339	48.27		
2pjuA	225	49.38		
2dtcA	126	53.11		
2hbtA	247	56.27		
1bqkA	124	56.42	b.6.1.1	22889
1pmiA	440	59.48	b.82.1.3	28114
1i6aA	219	60.07	c.94.1.1	61827
1o13A	136	60.72	c.55.5.1	80762
1k2fA	190	68.47	b.8.1.2	68054
1qwdA	177	69.52	b.60.1.1	96471
1efcA	393	70.50	b.43.3.1,b.44.1.1,c.37.1.8	25680,25720,32113
2a6zA	222	72.89	b.29.1.13	126319
1hs6A	611	74.87	a.118.1.7,b.98.1.1,d.92.1.13	61233,61234,61235
1a6wL	109	75.22	b.1.1.1	20252
2d40A	354	76.12		
1icwA	72	77.50	d.9.1.1	37357
1fa8A	135	80.20	d.32.1.1	38486
1npeA	267	81.94	b.68.5.1	92032
1qqp1	213	84.17		
1vcbA	118	84.22	d.15.1.1	37603
1iuzA	98	85.45	b.6.1.1	22861
1hurA	180	88.60	c.37.1.8	32052
1pgsA	314	89.57	b.121.1.1,b.121.1.1	23653,23654
1lm8B	118	89.64	d.15.1.1	74033