# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2cirA	297	1.67e-33		
1lurA	339	3.31e-31	b.30.5.4	84717
1nszA	347	1.70e-30	b.30.5.4	80724
1snzA	344	2.34e-30	b.30.5.4	98930
1mmuA	347	1.96e-29	b.30.5.4	79303
2htaA	309	3.07e-29		
1ygaA	342	3.94e-28		
1z45A	699	8.58e-26	b.30.5.4,c.2.1.2	124427,124428
1jovA	270	9.27e-24	b.30.5.7	84192
1bglA	1023	6.090	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	22097,22098,23734,24358,28857
1qksA	567	12.50	a.3.1.2,b.70.2.1	15951,27710
1o13A	136	14.88	c.55.5.1	80762
1tenA	90	18.73	b.1.2.1	21990
3blcA	330	22.02		
1wbaA	175	22.91	b.42.4.1	25591
2ow6A	1045	26.56		
2hp0A	466	27.17		
1u9tA	354	32.39	e.62.1.1	119651
1oafA	261	37.83	a.93.1.1	86734
1dp0A	1023	38.80	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	22073,22074,23722,24346,28845
2p5bA	352	40.86		
1jz8A	1023	43.58	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	67830,67831,67832,67833,67834
1dcuA	357	46.57	e.7.1.1	42943
1rkuA	206	46.66	c.108.1.11	97627
2gp5A	349	46.76		
2gu9A	113	49.86		
1ihmA	530	51.25	b.121.4.3	62385
1ug6A	431	51.93	c.1.8.4	88490
1gskA	513	54.07	b.6.1.3,b.6.1.3,b.6.1.3	83314,83315,83316
1vrpA	381	56.36	a.83.1.1,d.128.1.2	120473,120474
1e4mM	501	62.86	c.1.8.4	59226
2uwnA	187	70.52		
1lvk	762	72.52		
1d2sA	170	72.96	b.29.1.4	24221
1hbq	183	75.60		
1bqk	124	76.32		
1aq0A	306	79.75	c.1.8.3	28842
2nadA	393	79.94	c.2.1.4,c.23.12.1	30090,31350
1bsmA	201	85.33	a.2.11.1,d.44.1.1	15780,38743
1tbgA	340	86.03	b.69.4.1	27649
1gotB	340	87.21	b.69.4.1	27648
2ozvA	260	89.56