# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2cirA	297	1.28e-29		
1nszA	347	1.68e-27	b.30.5.4	80724
2htaA	309	2.75e-27		
1mmuA	347	3.56e-27	b.30.5.4	79303
1snzA	344	4.07e-27	b.30.5.4	98930
1lurA	339	7.35e-27	b.30.5.4	84717
1ygaA	342	4.08e-26		
1z45A	699	5.23e-25	b.30.5.4,c.2.1.2	124427,124428
1jovA	270	4.29e-21	b.30.5.7	84192
3blcA	330	0.4184		
1w3oA	216	18.20	b.45.1.1	114142
1wba	175	20.22		
2yu6A	141	26.37		
1rrvA	416	27.59	c.87.1.5	105083
1fiqB	350	32.27	d.87.2.1,d.145.1.3	40229,41760
1xdyA	298	32.31	d.176.1.1	115186
1adwA	123	32.99	b.6.1.1	22893
2rk9A	145	35.77		
1bglA	1023	36.03	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	22097,22098,23734,24358,28857
2pjuA	225	38.04		
1gbgA	214	38.19	b.29.1.2	24171
2ayhA	214	39.44	b.29.1.2	24172
1o20A	427	40.88	c.82.1.1	86556
1xfcA	384	41.69		
2a7bA	120	43.79	b.1.10.2	126333
1u08A	386	44.23	c.67.1.1	107543
2ayh	214	47.92		
2gb3A	409	48.22	c.67.1.1	134903
2p5bA	352	48.56		
1hd7A	318	50.32	d.151.1.1	41780
1o9gA	250	51.20	c.66.1.29	86692
1bxsA	501	51.39	c.82.1.1	35357
2bwrA	401	52.40		
1iysA	262	53.64	e.3.1.1	90723
1dcuA	357	54.48	e.7.1.1	42943
2gp5A	349	55.07		
2ivfC	214	56.97		
1cpnA	208	57.48	b.29.1.2	24175
1wbaA	175	58.04	b.42.4.1	25591
1o13A	136	63.41	c.55.5.1	80762
2ozvA	260	63.71		
1kfwA	435	64.65	c.1.8.5,d.26.3.1	77376,77377
1t3vA	124	65.83	c.55.5.1	112232
1tenA	90	66.38	b.1.2.1	21990
1rkuA	206	67.53	c.108.1.11	97627
1exg	110	69.23		
1bqk	124	71.46		
1qksA	567	73.34	a.3.1.2,b.70.2.1	15951,27710
1gbg	214	74.19		
1ajkA	214	78.03	b.29.1.2	24176
2i8aA	252	80.62		
1dbtA	239	83.25	c.1.2.3	28539
1dp0A	1023	89.65	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	22073,22074,23722,24346,28845