# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1lurA 339 4.05e-14 b.30.5.4 84717 1snzA 344 7.18e-14 b.30.5.4 98930 1nszA 347 1.19e-13 b.30.5.4 80724 1mmuA 347 1.29e-13 b.30.5.4 79303 1ygaA 342 5.22e-13 2cirA 297 5.45e-13 2htaA 309 1.48e-12 1z45A 699 1.12e-11 b.30.5.4,c.2.1.2 124427,124428 1jovA 270 4.49e-10 b.30.5.7 84192 3blcA 330 0.1994 3bs6A 280 0.2807 1jz8A 1023 0.9340 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1dp0A 1023 1.230 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22073,22074,23722,24346,28845 1h54A 754 1.668 a.102.1.4,b.30.5.3 60634,60635 2be1A 339 3.606 1ji6A 589 6.156 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1bglA 1023 6.252 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22097,22098,23734,24358,28857 2qfmA 364 7.690 3c6kA 381 9.468 1xksA 450 9.758 b.69.14.1 115422 1fnhA 271 11.34 b.1.2.1,b.1.2.1,b.1.2.1 21976,21977,21978 1cj3A 392 13.28 c.3.1.2,d.16.1.2 30347,37878 1pzsA 208 16.39 b.1.8.1 104397 2oqeA 660 18.11 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1e3aB 560 18.74 1gk9B 557 20.30 1jeyB 565 21.15 b.131.1.2,c.62.1.4 90372,90373 1ema 236 21.61 1efcA 393 23.79 b.43.3.1,b.44.1.1,c.37.1.8 25680,25720,32113 1nt0A 286 23.87 b.23.1.1,b.23.1.1,g.3.11.1 86143,86144,86145 1o7dD 282 23.89 1vjhA 122 27.09 d.129.3.1 100811 1ajqB 557 28.53 1v7wA 807 29.25 a.102.1.4,b.30.5.3 108411,108412 2iwkA 642 29.42 1ksiA 642 31.47 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 1pbeA 394 31.48 c.3.1.2,d.16.1.2 30338,37869 2cqsA 842 32.35 1xbrA 184 33.33 b.2.5.4 22458 1qh5A 260 33.81 d.157.1.2 42057 1pbe 394 34.52 1khxA 227 34.58 b.26.1.1 68631 2phlA 397 39.21 b.82.1.2,b.82.1.2 28082,28083 2gw3A 225 40.95 1n7oA 721 41.73 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 2aqmA 154 44.57 2r9qA 370 44.76 1w99A 558 46.05 1qunB 279 48.08 b.2.3.2,b.2.3.2 22411,22412 1txkA 498 48.11 b.1.18.2,b.30.5.9 107425,107426 1nkiA 135 51.57 d.32.1.2 91941 2ie2A 222 53.47 1a2vA 655 54.17 b.30.2.1,d.17.2.1,d.17.2.1 24416,38059,38060 1krhA 338 54.87 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1lp3A 519 55.15 b.121.5.2 74169 1ui7A 638 55.33 b.30.2.1,d.17.2.1,d.17.2.1 99413,99414,99415 1b9cA 236 57.08 d.22.1.1 38358 2p4mA 219 60.78 1h6rA 236 61.11 d.22.1.1 65683 1fna 93 62.15 2bsfA 176 63.12 2gw4B 162 63.66 1ek8A 185 64.84 d.67.3.1 59444 1oalA 151 65.65 b.1.8.1 86739 3bgaA 1010 65.77 2obwA 258 65.79 1asyA 490 66.19 b.40.4.1,d.104.1.1 25242,40763 2hpwA 233 66.96 1qdlB 195 67.11 c.23.16.1 31437 1b35C 282 67.25 2c9jA 223 67.90 2rh7A 239 68.20 1vheA 373 68.35 b.49.3.1,c.56.5.4 100669,100670 1fnf 368 69.11 2bgiA 272 71.27 1ui8A 638 71.36 b.30.2.1,d.17.2.1,d.17.2.1 99419,99420,99421 1eerB 227 71.73 b.1.2.1,b.1.2.1 22011,22012 1fnaA 91 72.49 b.1.2.1 21971 3bm4A 210 72.88 1zuxA 224 73.07 1at0A 145 73.31 b.86.1.1 28374 1gkfB 557 73.34 1miuA 738 74.11 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 79153,79154,79155,79156,79157 2qedA 258 74.56 2hqkA 219 75.29 1ygs 234 76.30 1on3A 523 78.17 c.14.1.4,c.14.1.4 87107,87108 2f9hA 129 79.67 b.161.1.1 133162 1ju3A 583 81.18 b.18.1.13,c.69.1.21 67300,67301 2dy3A 361 81.34 1qg3A 195 84.83 b.1.2.1,b.1.2.1 21993,21994 2vktA 289 84.83 1k1xA 659 85.63 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1iyjB 817 86.02 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 76948,76949,76950,76951,76952 1d2eA 397 88.16 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136